iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh2_kg.7__1006__AT4G31670.1	fgenesh2_kg.7__1006__AT4G31670.1	fgenesh2_kg.7__1006__AT4G31670.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	5.80e-72	243.4	168	473

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 1    tGlkNlgNtCYmNSvLQcLsnipelrellle.kkkeklneenpkepkgellkslqklfeelwkskkkavsprellka 76
           +Gl N gN+C+ N +LQcLs +++l  +lle  +k+++ ++     + ++ +++q+ +e   ++++  +sp ++++ 
   Q: 168  CGLMNCGNSCFANVILQCLSWTRPLVAYLLEkGHKRECMHN-----DWCFFCEFQTHVERA-SQSRFPFSPMNIISR 238
           7******************************5566677665.....67**********999.88889********** PP
   S: 77   lkkeaeefsgyeqqDaqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksq 153
           l ++   +   +q+Da+Ef+++ +d +++ +         ee++ +       +   + +++++li+ +F+g l+sq
   Q: 239  LTNIGGTLGYGRQEDAHEFMRYAIDMMQSVC--------LEEFGGE-------KIVPPRSQETTLIQYIFGGLLQSQ 300
           *******************************........4455555.......56789999**************** PP
   S: 154  ikclecdnvssreepfldlslpvpgkeetkkeslqdcLesftkeeelegenkyycekckkkqeaekklklkklPevL 230
           ++c  c++vs ++e+++dl ++ +g+      sl++cL++ft+ee l+g+n+y+c++c ++++a k+l++++ P++L
   Q: 301  VQCTVCNHVSDQYENMMDLIVEMHGDAV----SLEECLDQFTAEEWLHGDNMYKCDRCSDYVKACKRLTIWRAPNIL 373
           ***************************7....8******************************************** PP
   S: 231  ilhLkRfsfseeqksrekinkkvefpleLdlspfctspeekqkekkkYeLiavvvHsGslss...GHYvayvknekg 304
           ++ LkR+    ++++  k+nk+++fp +Ldl+p++++  ++   ++ Y+L+av+vH   l+    GHY++y+k+  g
   Q: 374  TIALKRY----QGGRYGKLNKRISFPATLDLNPYMSEGGDG---SDVYKLYAVIVHLDMLNAsffGHYICYIKDFCG 443
           *******....678999********************6655...79**********995554455************ PP
   S: 305  kWllfdDskVtevkeeevleetgstaYvlfYkr 337
           +W+++dDs++++v+ e+vl+   + aY+l+Y r
   Q: 444  NWYRIDDSEIESVELEDVLS---QRAYMLLYSR 473
           ********************...9*******87 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MHEVGFPLDL SVFTRLIATL FFLAVGVFYF LKNTAAKYFD IGAAAAGGFD RDFMAVDTED 60
CSVCGNYSTK KCSRCKSVRY CSAECQRSDW SSGHQRKCKD YGITTLTPSA KNGLRFRASP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGATCGATGA TTTCAAGAAG CGAATTAGAT GCATGAGGTT GGTTTTCCGT TGGATCTCTC 60
TGTCTTCACT CGCCTCATAG CGACTCTATT CTTCCTCGCC GTTGGTGTTT TTTACTTTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0378--Hydrolase
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001394--Peptidase_C19_UCH
IPR018200--USP_CS
IPR028889--USP_dom
IPR002893--Znf_MYND

PROSITE

PS00972--USP_1
PS50235--USP_3
PS01360--ZF_MYND_1
PS50865--ZF_MYND_2

Pfam

PF00443--UCH
PF01753--zf-MYND

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0046872--F:metal ion binding
GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0016579--P:protein deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

aly:ARALYDRAFT_491573

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-007277	Arabidopsis thaliana	93.34	0.00e+00	1181.00
IUUC-Bol-016178	Brassica oleracea	76.70	0.00e+00	927.00
IUUC-Bra-018083	Brassica rapa	76.19	0.00e+00	914.00
IUUC-Cne-027049	Cryptococcus neoformans	30.91	1.00e-37	150.00
IUUC-Gma-042958	Glycine max	65.15	0.00e+00	663.00
IUUC-Lpe-051385	Leersia perrieri	56.55	3.00e-130	458.00
IUUC-Mac-065204	Musa acuminata	59.70	5.00e-166	576.00
IUUC-Oba-075131	Oryza barthii	63.61	5.00e-147	514.00
IUUC-Obr-076763	Oryza brachyantha	63.21	1.00e-158	553.00
IUUC-Oin-079613	Oryza indica	60.57	2.00e-148	519.00
IUUC-Ome-081416	Oryza meridionalis	63.21	8.00e-159	553.00
IUUC-Opu-083135	Oryza punctata	62.74	1.00e-157	550.00
IUUC-Ppa-095936	Physcomitrella patens	61.45	8.00e-132	464.00
IUUC-Pop-099232	Populus trichocarpa	61.14	0.00e+00	696.00
IUUC-Ppe-101845	Prunus persica	65.50	1.00e-177	615.00
IUUC-Smo-109625	Selaginella moellendorffii	54.57	2.00e-144	506.00
IUUC-Stu-112696	Solanum tuberosum	61.52	3.00e-120	424.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence