iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006651

UUCD1 version

UUC-ArT-01414

Ensembl Protein ID

AT2G47700.1

UniProt Accession

O82239; O82239_ARATH

Genbank Protein ID

AAC63626.2; AAO00772.1; AAP68284.1; AAZ14075.1; AEC10878.1

Protein Name

At2g47700; Putative uncharacterized protein At2g47700; RING/U-box superfamily protein

Genbank Nucleotide ID

AC005309; BT002412; BT008845; DQ086859; CP002685

Gene Name

RFI2; RED AND FAR-RED INSENSITIVE 2; At2g47700; F17A22.9

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT2G47700	AT2G47700.2	AT2G47700.2
AT2G47700	AT2G47700.1	AT2G47700.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	PINA	HINT
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	16339806

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	6.80e-08	33.8	38	83

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf.kdgplv...lpCgHvfhadClqkwpglknssskefrCPlCr 46
           C+iCle+  +dg+++   l+CgH+fh+dC+    g+  + +++ +CP Cr
   Q: 38   CSICLESVlDDGTRSkakLQCGHQFHLDCI----GSAFNMKGAMQCPNCR 83
           ******88877777544488*********9....55579**********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MAGAKDSGCD DDLRIAGGCD PGKRGNPEDS SSPVEVSCSI CLESVLDDGT RSKAKLQCGH 60
QFHLDCIGSA FNMKGAMQCP NCRNVEKGQW LYANGSTRPF PEFSMEDWIP EEDLYGLSYP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCACAATGGG AGAGGAAAGA AAAGAAAAGG GAGAGTCCAA TGTCATTGTC CGGTTTTGAA 60
CCACGTCATC TCTAACAGGT CGGACGAGAG AGAGAGAGAG AGAGAGAGGA AGAGGAAGGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005821	Arabidopsis lyrata	89.33	2.00e-180	624.00
IUUC-Ame-011941	Astyanax mexicanus	29.73	2.00e-05	43.90
IUUC-Bdi-014427	Brachypodium distachyon	59.52	2.00e-40	159.00
IUUC-Bol-016523	Brassica oleracea	74.79	9.00e-144	502.00
IUUC-Bra-016821	Brassica rapa	75.42	1.00e-139	488.00
IUUC-Gmo-039590	Gadus morhua	29.73	2.00e-05	43.50
IUUC-Gac-041759	Gasterosteus aculeatus	29.73	3.00e-05	43.10
IUUC-Hvu-047201	Hordeum vulgare	35.47	3.00e-41	162.00
IUUC-Mmr-060582	Microcebus murinus	31.08	8.00e-05	41.60
IUUC-Opr-070290	Ochotona princeps	32.43	4.00e-05	42.40
IUUC-Ont-072477	Oreochromis niloticus	29.73	3.00e-05	43.10
IUUC-Oan-073083	Ornithorhynchus anatinus	32.88	4.00e-05	42.40
IUUC-Pfo-096590	Poecilia formosa	29.73	3.00e-05	43.50
IUUC-Smo-108730	Selaginella moellendorffii	54.10	8.00e-29	120.00
IUUC-Tru-118590	Takifugu rubripes	27.03	1.00e-05	43.90
IUUC-Tni-120695	Tetraodon nigroviridis	27.03	1.00e-05	43.90
IUUC-Tca-121773	Theobroma cacao	43.56	1.00e-45	176.00
IUUC-Tbe-127561	Tupaia belangeri	30.77	9.00e-05	41.60
IUUC-Vvi-130867	Vitis vinifera	38.80	2.00e-53	202.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence