iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0003s18540	POPTR_0003s18540.2	POPTR_0003s18540.2
POPTR_0003s18540	POPTR_0003s18540.1	POPTR_0003s18540.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	4.70e-24	84.9	144	185
ULD/UDP/UBQ/UBQ_PIM	2.20e-22	79.9	1	78

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 3    dedkleqlveMG...FdreealqaLraannnleaAveyLldg 41
           +e+ l+q+++MG   +d+e++ +aLraa+nn+e+Av+yL++g
   Q: 144  LEQTLQQIMDMGggtWDKETVTRALRAAYNNPERAVDYLYSG 185
           799************************************986 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           mkltvktlkg++fe++v + dt+  +K++i++ +g   +p+ qq LI++Gk+LkD+ttL ++++ ++ +++++++ksk
   Q: 1    MKLTVKTLKGSHFEIKVHPTDTIMGVKKNIEDAQGkdnYPCGQQLLIHNGKVLKDETTLADNKVTEDGFLVVMLSKSK 78
           99*************************************************************************997 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MKLTVKTLKG SHFEIKVHPT DTIMGVKKNI EDAQGKDNYP CGQQLLIHNG KVLKDETTLA 60
DNKVTEDGFL VVMLSKSKTG TAGTSSTQPV STPPTTTPTS ISTPAPDAQA LDSKSASASD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCCTCTGTTA GCTCTTTATA GATTCCTGTA CCAGCCACAG CCAGCACGCT CTGGTTCTCT 60
CTAGGGTTTC CTCCTAGCAA CGCTGTCGTT TTTGCATCTC TCCCCCATAA TTCGTCGACA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0003s18540g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000088	Aegilops tauschii	52.78	1.00e-87	316.00
IUUC-Atr-002756	Amborella trichopoda	67.56	7.00e-122	429.00
IUUC-Ani-009460	Aspergillus nidulans	40.24	1.00e-30	126.00
IUUC-Bdi-014355	Brachypodium distachyon	60.32	2.00e-109	388.00
IUUC-Cre-022810	Chlamydomonas reinhardtii	40.94	4.00e-21	95.10
IUUC-Gma-044077	Glycine max	77.48	6.00e-140	489.00
IUUC-Lpe-051168	Leersia perrieri	61.08	2.00e-115	408.00
IUUC-Mtr-058239	Medicago truncatula	70.63	8.00e-137	479.00
IUUC-Oba-074972	Oryza barthii	60.86	4.00e-113	400.00
IUUC-Obr-076909	Oryza brachyantha	64.78	4.00e-119	420.00
IUUC-Ogl-077067	Oryza glaberrima	62.90	3.00e-118	417.00
IUUC-Ogu-078023	Oryza glumaepatula	61.13	3.00e-99	354.00
IUUC-Oin-079203	Oryza indica	63.17	7.00e-118	416.00
IUUC-Olo-080559	Oryza longistaminata	63.27	5.00e-118	416.00
IUUC-Oni-082812	Oryza nivara	60.59	8.00e-113	399.00
IUUC-Oru-084942	Oryza rufipogon	58.54	1.00e-101	362.00
IUUC-Osa-085951	Oryza sativa	63.44	7.00e-118	416.00
IUUC-Ola-086540	Oryzias latipes	35.06	9.00e-30	124.00
IUUC-Ppe-101522	Prunus persica	78.57	7.00e-151	526.00
IUUC-Smo-109518	Selaginella moellendorffii	58.64	3.00e-93	334.00
IUUC-Sly-111349	Solanum lycopersicum	71.77	7.00e-135	473.00
IUUC-Stu-112306	Solanum tuberosum	69.89	5.00e-130	456.00
IUUC-Sbi-114459	Sorghum bicolor	62.37	3.00e-113	400.00
IUUC-Tca-121594	Theobroma cacao	77.98	5.00e-149	520.00
IUUC-Tae-123231	Triticum aestivum	63.00	1.00e-112	399.00
IUUC-Tur-126144	Triticum urartu	52.05	4.00e-96	344.00
IUUC-Vvi-130855	Vitis vinifera	80.71	2.00e-98	352.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence