iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007500

Ensembl Protein ID

AT2G41160.1

UniProt Accession

Q8RXQ2; O80671; RBL18_ARATH

Genbank Protein ID

AAD11996.1; AEC09939.1; AAL86004.1; AAM91727.1

Protein Name

Rhomboid-like protein 18

Genbank Nucleotide ID

AC004261; CP002685; AY080734; AY133793

Gene Name

RBL18; At2g41160; T3K9.7

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT2G41160	AT2G41160.1	AT2G41160.1
AT2G41160	AT2G41160.2	AT2G41160.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
UBD/Alpha-Helix/UBA	UBA	16895613

Classification

Family	E-value	Score	Start	End
UBD/Alpha-Helix/UBA	4.20e-09	37.1	246	283

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 3    dedkleqlveMGFdreealqaLraannnleaAveyLld 40
           +e++++ lv+MGFd+++a+qaL  a n+++aA++ Ll+
   Q: 246  SEEAIATLVSMGFDQNAARQALVHARNDVNAATNILLE 283
           699*********************************96 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis.

Protein Sequence
(Fasta)

MNGGPSGFNN APVTKAFVIA TALFTVFFGI RGGSSKLGLS YQDIFEKFRI WKLIISAFAF 60
SSTTQLLSGL YLLYFFRVFE RQIGSNKYSV FIFFSGFVSL ILETILLSLT KDPTANLLTS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTAGTTTAA TGCATAATGC TGATAAATTA TTAAAATCAG CAAACAATAA TGAAAGATTC 60
TGGATTGTTC TGTTTCAGCT GATTATTTAC ATTAGATATC TGAGTTGTTG TTTGAATTCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR022764--Peptidase_S54_rhomboid_dom
IPR015940--UBA
IPR009060--UBA-like

PROSITE

PS50030--UBA

Pfam

PF01694--Rhomboid
PF00627--UBA

SMART

SM00165--UBA

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0004252--F:serine-type endopeptidase activity
GO:0043130--F:ubiquitin binding

KEGG

ath:AT2G41160

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002272	Ailuropoda melanoleuca	27.39	1.00e-20	92.80
IUUC-Atr-002884	Amborella trichopoda	61.46	2.00e-62	231.00
IUUC-Aly-005992	Arabidopsis lyrata	97.91	6.00e-141	492.00
IUUC-Bgr-012021	Blumeria graminis	26.09	2.00e-13	68.60
IUUC-Bol-015531	Brassica oleracea	82.82	8.00e-125	439.00
IUUC-Bra-017181	Brassica rapa	83.45	8.00e-117	412.00
IUUC-Cfa-021174	Canis familiaris	29.80	3.00e-23	101.00
IUUC-Cgl-026433	Colletotrichum gloeosporioides	26.87	4.00e-17	80.90
IUUC-Dre-027633	Danio rerio	29.02	2.00e-20	92.40
IUUC-Dno-029418	Dasypus novemcinctus	27.96	1.00e-21	96.30
IUUC-Dse-031426	Dothistroma septosporum	28.03	1.00e-11	62.40
IUUC-Fca-036332	Felis catus	28.71	9.00e-23	100.00
IUUC-Fox-037932	Fusarium oxysporum	22.48	6.00e-12	63.90
IUUC-Gac-041765	Gasterosteus aculeatus	27.27	6.00e-16	77.40
IUUC-Kpa-049248	Komagataella pastoris	23.43	3.00e-08	51.20
IUUC-Loc-052511	Lepisosteus oculatus	30.38	4.00e-25	108.00
IUUC-Laf-053414	Loxodonta africana	28.29	3.00e-22	98.60
IUUC-Meu-056905	Macropus eugenii	30.85	1.00e-13	69.30
IUUC-Mla-058868	Melampsora laricipopulina	24.44	1.00e-06	46.60
IUUC-Mga-059639	Meleagris gallopavo	41.54	2.00e-06	44.30
IUUC-Mmr-061267	Microcebus murinus	29.84	1.00e-11	63.20
IUUC-Mdo-062640	Monodelphis domestica	28.24	5.00e-20	91.30
IUUC-Mpu-066519	Mustela putorius furo	27.78	3.00e-22	98.20
IUUC-Ncr-068703	Neurospora crassa	24.77	6.00e-15	73.90
IUUC-Nle-070130	Nomascus leucogenys	30.37	3.00e-15	75.50
IUUC-Opr-070252	Ochotona princeps	27.60	1.00e-20	93.20
IUUC-Oan-072843	Ornithorhynchus anatinus	34.40	9.00e-11	58.90
IUUC-Ola-086714	Oryzias latipes	34.71	3.00e-08	52.00
IUUC-Olu-087791	Ostreococcus lucimarinus	31.00	3.00e-13	67.80
IUUC-Psi-093075	Pelodiscus sinensis	27.09	4.00e-21	94.70
IUUC-Pno-095028	Phaeosphaeria nodorum	26.90	8.00e-08	50.40
IUUC-Ppa-095918	Physcomitrella patens	55.82	1.00e-78	285.00
IUUC-Pgr-103488	Puccinia graminis	21.88	1.00e-05	42.70
IUUC-Sha-106739	Sarcophilus harrisii	28.76	4.00e-21	94.70
IUUC-Sja-107960	Schizosaccharomyces japonicus	23.89	4.00e-13	67.80
IUUC-Ssl-108440	Sclerotinia sclerotiorum	27.48	2.00e-17	82.00
IUUC-Ssc-115286	Sus scrofa	33.85	4.00e-12	64.30
IUUC-Tgu-117075	Taeniopygia guttata	27.51	3.00e-24	105.00
IUUC-Tru-118110	Takifugu rubripes	26.21	3.00e-20	91.70
IUUC-Tsy-118933	Tarsius syrichta	29.59	8.00e-15	73.60
IUUC-Tni-119811	Tetraodon nigroviridis	28.43	1.00e-26	113.00
IUUC-Tre-122152	Trichoderma reesei	25.96	5.00e-12	64.30
IUUC-Tvi-122334	Trichoderma virens	27.45	8.00e-13	66.60
IUUC-Tme-127059	Tuber melanosporum	24.77	7.00e-15	73.60
IUUC-Vda-129740	Verticillium dahliae	25.34	6.00e-16	77.40
IUUC-Vpa-130623	Vicugna pacos	22.26	2.00e-09	55.80
IUUC-Xtr-132867	Xenopus tropicalis	29.68	7.00e-20	90.90

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence