iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sbi-114016

Ensembl Protein ID

Sb06g022140.1

UniProt Accession

C5YBY0; C5YBY0_SORBI

Genbank Protein ID

EES12476.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000765

Gene Name

SORBI_006G142400

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb06g022140	Sb06g022140.1	Sb06g022140.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	42.50	3.00e-79	290.00	IUUC-Sce-106434

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MYGVGGGGGG FNAPSTTAGR RRNPGDEEED EEEEGGEGRV LEAWERAYAD ERSWESLQED 60
ESGLLHPIDT KALVHSQYRR RLLLRSAAAA AARIQKGLIR YLYIVIDLSR AASEMDYRPS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTACGGCG TCGGCGGCGG TGGGGGCGGC TTCAACGCGC CCTCCACCAC TGCCGGTCGG 60
CGCCGCAACC CGGGCGACGA GGAGGAGGAC GAGGAGGAGG AGGGCGGTGA GGGCCGCGTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR007198--Ssl1-like
IPR004595--TFIIH_C1-like_dom
IPR012170--TFIIH_SSL1/p44
IPR002035--VWF_A
IPR013087--Znf_C2H2_type

PROSITE

PS50234--VWFA
PS00028--ZINC_FINGER_C2H2_1

Pfam

PF07975--C1_4
PF04056--Ssl1

SMART

SM01047--C1_4
SM00327--VWA

Gene Ontology

GO:0000439--C:core TFIIH complex
GO:0005675--C:holo TFIIH complex
GO:0003676--F:nucleic acid binding
GO:0008270--F:zinc ion binding
GO:0006289--P:nucleotide-excision repair
GO:0006357--P:regulation of transcription from RNA polymerase II promoter
GO:0006351--P:transcription, DNA-templated

KEGG

sbi:SORBI_06g022140

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000536	Aegilops tauschii	83.75	2.00e-143	501.00
IUUC-Aml-002041	Ailuropoda melanoleuca	41.22	3.00e-74	271.00
IUUC-Atr-003056	Amborella trichopoda	71.92	3.00e-138	483.00
IUUC-Apl-003464	Anas platyrhynchos	41.16	5.00e-69	253.00
IUUC-Aca-004745	Anolis carolinensis	41.60	6.00e-73	266.00
IUUC-Aly-005559	Arabidopsis lyrata	74.41	7.00e-156	542.00
IUUC-Ath-007556	Arabidopsis thaliana	74.41	8.00e-156	542.00
IUUC-Ago-007851	Ashbya gossypii	43.18	1.00e-82	299.00
IUUC-Acl-008100	Aspergillus clavatus	38.21	7.00e-76	276.00
IUUC-Afl-008649	Aspergillus flavus	37.68	1.00e-11	60.10
IUUC-Afu-009066	Aspergillus fumigatus	37.72	3.00e-78	285.00
IUUC-Ani-009372	Aspergillus nidulans	39.39	9.00e-78	283.00
IUUC-Ang-009726	Aspergillus niger	37.38	5.00e-81	294.00
IUUC-Aor-010135	Aspergillus oryzae	38.12	1.00e-77	283.00
IUUC-Ate-010399	Aspergillus terreus	32.69	1.00e-18	85.10
IUUC-Ame-011618	Astyanax mexicanus	41.37	1.00e-82	299.00
IUUC-Bgr-012154	Blumeria graminis	36.87	2.00e-72	265.00
IUUC-Bta-012353	Bos taurus	41.22	3.00e-78	284.00
IUUC-Bci-013932	Botrytis cinerea	40.96	2.00e-78	285.00
IUUC-Bdi-014391	Brachypodium distachyon	89.77	0.00e+00	677.00
IUUC-Bol-015128	Brassica oleracea	74.42	2.00e-158	551.00
IUUC-Bra-017932	Brassica rapa	74.55	1.00e-158	551.00
IUUC-Cel-018649	Caenorhabditis elegans	38.96	6.00e-66	243.00
IUUC-Cja-018776	Callithrix jacchus	40.71	9.00e-74	269.00
IUUC-Cfa-020584	Canis familiaris	41.22	5.00e-75	273.00
IUUC-Cpo-021300	Cavia porcellus	41.22	3.00e-74	271.00
IUUC-Cre-022657	Chlamydomonas reinhardtii	49.35	4.00e-94	337.00
IUUC-Csa-024092	Chlorocebus sabaeus	40.97	7.00e-74	270.00
IUUC-Cho-024919	Choloepus hoffmanni	42.13	3.00e-35	140.00
IUUC-Cin-025386	Ciona intestinalis	40.31	2.00e-79	288.00
IUUC-Csv-026295	Ciona savignyi	38.79	5.00e-75	273.00
IUUC-Cgl-026612	Colletotrichum gloeosporioides	37.00	4.00e-72	264.00
IUUC-Cne-026956	Cryptococcus neoformans	36.02	3.00e-74	271.00
IUUC-Cme-027150	Cyanidioschyzon merolae	35.26	1.00e-52	199.00
IUUC-Dre-027962	Danio rerio	41.84	5.00e-84	303.00
IUUC-Dno-029979	Dasypus novemcinctus	40.64	6.00e-67	246.00
IUUC-Dor-030926	Dipodomys ordii	30.65	2.60e-01	30.80
IUUC-Dse-031405	Dothistroma septosporum	41.62	8.00e-77	280.00
IUUC-Dme-031710	Drosophila melanogaster	37.66	5.00e-77	280.00
IUUC-Ete-032631	Echinops telfairi	38.27	7.00e-67	246.00
IUUC-Eca-034054	Equus caballus	41.73	3.00e-75	274.00
IUUC-Eeu-035061	Erinaceus europaeus	30.65	1.90e-01	30.80
IUUC-Fca-035724	Felis catus	39.19	4.00e-70	257.00
IUUC-Fal-036987	Ficedula albicollis	41.07	1.00e-82	298.00
IUUC-Fox-037692	Fusarium oxysporum	39.71	1.00e-80	292.00
IUUC-Fso-038442	Fusarium solani	40.68	1.00e-80	292.00
IUUC-Gmo-039273	Gadus morhua	42.78	3.00e-84	304.00
IUUC-Ggr-040009	Gaeumannomyces graminis	41.10	7.00e-63	233.00
IUUC-Gga-041089	Gallus gallus	40.56	3.00e-82	298.00
IUUC-Gac-041978	Gasterosteus aculeatus	41.07	5.00e-78	283.00
IUUC-Gma-043371	Glycine max	76.74	8.00e-175	605.00
IUUC-Ggo-044653	Gorilla gorilla	26.67	2.30e-01	30.80
IUUC-Hsa-046001	Homo sapiens	40.97	2.00e-73	268.00
IUUC-Itr-048355	Ictidomys tridecemlineatus	41.48	3.00e-81	294.00
IUUC-Kpa-049235	Komagataella pastoris	41.87	8.00e-78	283.00
IUUC-Lch-049926	Latimeria chalumnae	41.37	1.00e-77	282.00
IUUC-Lpe-051352	Leersia perrieri	88.91	0.00e+00	655.00
IUUC-Loc-051987	Lepisosteus oculatus	40.95	3.00e-82	297.00
IUUC-Lma-053171	Leptosphaeria maculans	35.00	6.00e-67	247.00
IUUC-Laf-054372	Loxodonta africana	41.22	6.00e-78	283.00
IUUC-Mcc-055108	Macaca mulatta	40.97	8.00e-74	270.00
IUUC-Mor-056990	Magnaporthe oryzae	37.07	4.00e-76	278.00
IUUC-Mtr-058401	Medicago truncatula	74.55	4.00e-170	589.00
IUUC-Mla-059186	Melampsora laricipopulina	40.69	2.00e-83	302.00
IUUC-Mvi-060262	Microbotryum violaceum	40.05	2.00e-81	295.00
IUUC-Mmr-061688	Microcebus murinus	37.14	2.00e-61	228.00
IUUC-Mdo-062154	Monodelphis domestica	40.97	1.00e-77	282.00
IUUC-Mmu-064232	Mus musculus	40.36	2.00e-72	265.00
IUUC-Mac-065091	Musa acuminata	79.75	4.00e-167	580.00
IUUC-Mpu-066747	Mustela putorius furo	38.19	4.00e-61	227.00
IUUC-Mlu-067799	Myotis lucifugus	38.36	5.00e-65	240.00
IUUC-Nfi-068371	Neosartorya fischeri	38.75	8.00e-14	68.90
IUUC-Ncr-068704	Neurospora crassa	38.77	9.00e-80	290.00
IUUC-Nle-069054	Nomascus leucogenys	40.71	4.00e-73	267.00
IUUC-Ont-071624	Oreochromis niloticus	43.11	6.00e-85	306.00
IUUC-Oan-072898	Ornithorhynchus anatinus	40.61	1.00e-77	282.00
IUUC-Ocu-074289	Oryctolagus cuniculus	38.51	8.00e-57	213.00
IUUC-Oba-075985	Oryza barthii	90.72	0.00e+00	652.00
IUUC-Obr-076887	Oryza brachyantha	90.71	0.00e+00	683.00
IUUC-Ogl-077823	Oryza glaberrima	90.72	0.00e+00	652.00
IUUC-Ogu-078412	Oryza glumaepatula	91.40	2.00e-168	584.00
IUUC-Oin-079569	Oryza indica	90.09	4.00e-143	500.00
IUUC-Olo-080249	Oryza longistaminata	91.84	2.00e-143	501.00
IUUC-Ome-081240	Oryza meridionalis	91.40	2.00e-168	584.00
IUUC-Oni-082152	Oryza nivara	91.40	7.00e-168	582.00
IUUC-Opu-084011	Oryza punctata	91.59	0.00e+00	659.00
IUUC-Oru-084719	Oryza rufipogon	90.00	4.00e-174	603.00
IUUC-Osa-085286	Oryza sativa	90.00	0.00e+00	657.00
IUUC-Ola-086525	Oryzias latipes	40.82	1.00e-67	249.00
IUUC-Olu-087876	Ostreococcus lucimarinus	44.19	6.00e-86	310.00
IUUC-Oga-088125	Otolemur garnettii	40.71	6.00e-76	276.00
IUUC-Oar-089701	Ovis aries	41.22	4.00e-78	284.00
IUUC-Ptr-091218	Pan troglodytes	40.71	1.00e-73	269.00
IUUC-Pan-091755	Papio anubis	40.97	8.00e-74	270.00
IUUC-Psi-094061	Pelodiscus sinensis	41.22	4.00e-79	287.00
IUUC-Pma-094430	Petromyzon marinus	42.46	5.00e-53	199.00
IUUC-Pno-094900	Phaeosphaeria nodorum	31.54	9.00e-44	171.00
IUUC-Ppa-095895	Physcomitrella patens	60.77	1.00e-143	501.00
IUUC-Pfo-096297	Poecilia formosa	44.05	8.00e-55	206.00
IUUC-Pab-097717	Pongo abelii	40.97	8.00e-74	270.00
IUUC-Pop-098938	Populus trichocarpa	77.72	2.00e-163	567.00
IUUC-Pca-100389	Procavia capensis	39.77	3.00e-61	227.00
IUUC-Ppe-102045	Prunus persica	76.23	2.00e-161	560.00
IUUC-Pva-102357	Pteropus vampyrus	47.09	3.00e-38	150.00
IUUC-Pgr-103399	Puccinia graminis	40.72	2.00e-82	298.00
IUUC-Ptt-103872	Puccinia triticina	40.43	5.00e-82	297.00
IUUC-Pte-104092	Pyrenophora teres	38.49	3.00e-62	231.00
IUUC-Pyt-104669	Pyrenophora triticirepentis	38.80	1.00e-62	232.00
IUUC-Rno-105515	Rattus norvegicus	41.37	3.00e-77	281.00
IUUC-Sce-106434	Saccharomyces cerevisiae	42.50	5.00e-84	303.00
IUUC-Sha-106808	Sarcophilus harrisii	40.46	3.00e-76	277.00
IUUC-Sja-107995	Schizosaccharomyces japonicus	39.85	1.00e-74	272.00
IUUC-Spo-108044	Schizosaccharomyces pombe	40.81	1.00e-85	309.00
IUUC-Smo-109581	Selaginella moellendorffii	56.70	5.00e-128	449.00
IUUC-Sit-110704	Setaria italica	93.72	0.00e+00	707.00
IUUC-Sly-110990	Solanum lycopersicum	71.75	2.00e-128	450.00
IUUC-Stu-112542	Solanum tuberosum	73.42	6.00e-89	319.00
IUUC-Sar-113766	Sorex araneus	40.37	1.00e-61	229.00
IUUC-Sre-115099	Sporisorium reilianum	37.18	5.00e-76	277.00
IUUC-Ssc-115277	Sus scrofa	40.97	7.00e-72	263.00
IUUC-Tgu-117343	Taeniopygia guttata	40.82	4.00e-82	297.00
IUUC-Tru-118397	Takifugu rubripes	41.10	1.00e-78	285.00
IUUC-Tsy-118900	Tarsius syrichta	30.65	2.50e-01	30.80
IUUC-Tni-120272	Tetraodon nigroviridis	41.06	5.00e-77	280.00
IUUC-Tca-121514	Theobroma cacao	78.63	3.00e-176	610.00
IUUC-Tre-121990	Trichoderma reesei	39.56	1.00e-78	286.00
IUUC-Tvi-122504	Trichoderma virens	41.83	2.00e-76	278.00
IUUC-Tae-123153	Triticum aestivum	89.95	0.00e+00	668.00
IUUC-Tur-126693	Triticum urartu	95.60	3.00e-142	496.00
IUUC-Tme-127011	Tuber melanosporum	40.05	2.00e-79	288.00
IUUC-Tbe-127939	Tupaia belangeri	40.71	7.00e-73	266.00
IUUC-Ttr-128889	Tursiops truncatus	35.37	6.00e-62	230.00
IUUC-Uma-129450	Ustilago maydis	36.64	1.00e-74	273.00
IUUC-Vda-129919	Verticillium dahliae	38.97	6.00e-70	257.00
IUUC-Vvi-130928	Vitis vinifera	78.35	7.00e-167	579.00
IUUC-Xtr-131891	Xenopus tropicalis	36.41	2.00e-67	248.00
IUUC-Xma-133260	Xiphophorus maculatus	43.25	5.00e-54	203.00
IUUC-Yli-134578	Yarrowia lipolytica	42.29	1.00e-79	290.00
IUUC-Zma-135427	Zea mays	96.43	0.00e+00	726.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence