iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007083

Ensembl Protein ID

AT3G56740.1

UniProt Accession

Q9LET3; RBL20_ARATH

Genbank Protein ID

CAC00737.1; AEE79560.1; AAO63279.1; BAE99920.1; AAM63026.1

Protein Name

Rhomboid-like protein 20

Genbank Nucleotide ID

AL390921; CP002686; BT005215; AK227952; AY085810

Gene Name

RBL20; At3g56740; T8M16.70

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G56740	AT3G56740.1	AT3G56740.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
UBD/Alpha-Helix/UBA	UBA	16895613

Classification

Family	E-value	Score	Start	End
UBD/Alpha-Helix/UBA	5.80e-09	36.7	252	289

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 3    dedkleqlveMGFdreealqaLraannnleaAveyLld 40
           +e+++  lv+MGFdr++a+qaL  a n+++aA++ Ll+
   Q: 252  SEEAITTLVSMGFDRNAARQALVHARNDVNAATNILLE 289
           699*********************************96 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis.

Protein Sequence
(Fasta)

MNGGPSGFHN APVTKAFVIT SALFTVFFGI QGRSSKLGLS YQDIFEKFRI WKLIMSTFAF 60
SSTPELMFGL YLLYYFRVFE RQIGSNKYSV FILFSGTVSL LLEVILLSLL KDTTANLLTS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTCTCTCTT GCCTATTGCA ACAATAATGA TATGTTTTAT GTTGCACAAA AAAATTAAAG 60
ATGTAATGAT TTTTTATACA GTACTATTTC GTAATTGATG TTTGATTTCG AAGCAAAAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR022764--Peptidase_S54_rhomboid_dom
IPR015940--UBA
IPR009060--UBA-like

PROSITE

PS50030--UBA

Pfam

PF01694--Rhomboid
PF00627--UBA

SMART

SM00165--UBA

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0004252--F:serine-type endopeptidase activity
GO:0043130--F:ubiquitin binding

KEGG

ath:AT3G56740

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Apl-004075	Anas platyrhynchos	30.12	7.00e-25	107.00
IUUC-Aca-004595	Anolis carolinensis	26.71	6.00e-21	94.00
IUUC-Aly-006411	Arabidopsis lyrata	98.63	2.00e-148	517.00
IUUC-Acl-008340	Aspergillus clavatus	29.66	2.00e-05	42.70
IUUC-Afu-009037	Aspergillus fumigatus	25.49	4.00e-06	44.70
IUUC-Ang-009777	Aspergillus niger	28.28	6.00e-08	50.40
IUUC-Ame-011242	Astyanax mexicanus	31.68	5.00e-08	50.40
IUUC-Bta-013487	Bos taurus	26.51	3.00e-20	91.70
IUUC-Bci-013918	Botrytis cinerea	29.67	1.00e-15	76.30
IUUC-Bdi-014098	Brachypodium distachyon	64.16	6.00e-88	316.00
IUUC-Bra-017340	Brassica rapa	92.15	1.00e-134	471.00
IUUC-Cja-018818	Callithrix jacchus	29.14	5.00e-22	97.80
IUUC-Cpo-021964	Cavia porcellus	27.52	1.00e-16	80.10
IUUC-Cre-022898	Chlamydomonas reinhardtii	36.14	1.00e-21	96.30
IUUC-Csa-024015	Chlorocebus sabaeus	29.05	4.00e-21	94.70
IUUC-Cho-024706	Choloepus hoffmanni	25.50	7.00e-16	77.40
IUUC-Cne-026916	Cryptococcus neoformans	31.45	3.00e-13	68.90
IUUC-Cme-027354	Cyanidioschyzon merolae	28.30	8.00e-06	43.50
IUUC-Dor-030432	Dipodomys ordii	27.25	2.00e-21	95.50
IUUC-Dme-031709	Drosophila melanogaster	38.24	2.40e-02	31.20
IUUC-Ete-032599	Echinops telfairi	29.15	5.00e-15	74.70
IUUC-Eca-034280	Equus caballus	28.95	1.00e-21	96.30
IUUC-Eeu-034998	Erinaceus europaeus	27.54	7.00e-21	94.00
IUUC-Fal-036680	Ficedula albicollis	30.50	2.00e-25	108.00
IUUC-Fso-038343	Fusarium solani	24.19	4.00e-11	61.20
IUUC-Gmo-039606	Gadus morhua	27.09	4.00e-13	68.20
IUUC-Ggr-039926	Gaeumannomyces graminis	27.23	7.00e-13	67.00
IUUC-Gga-041116	Gallus gallus	30.29	5.00e-24	104.00
IUUC-Gma-043546	Glycine max	74.40	5.00e-121	426.00
IUUC-Ggo-045366	Gorilla gorilla	28.43	7.00e-21	94.00
IUUC-Hsa-045893	Homo sapiens	28.72	2.00e-20	92.80
IUUC-Hvu-047737	Hordeum vulgare	65.41	1.00e-95	342.00
IUUC-Itr-048679	Ictidomys tridecemlineatus	33.08	1.00e-10	58.20
IUUC-Lpe-050798	Leersia perrieri	63.70	1.00e-86	311.00
IUUC-Mcc-055111	Macaca mulatta	28.72	8.00e-21	93.60
IUUC-Mor-057083	Magnaporthe oryzae	25.23	1.00e-13	69.30
IUUC-Mpo-057326	Magnaporthe poae	27.49	3.00e-12	64.70
IUUC-Mtr-057918	Medicago truncatula	73.04	2.00e-120	424.00
IUUC-Mvi-060380	Microbotryum violaceum	25.31	5.00e-07	48.10
IUUC-Mmu-063305	Mus musculus	28.76	2.00e-19	89.00
IUUC-Mac-065099	Musa acuminata	66.10	5.00e-94	336.00
IUUC-Mlu-067419	Myotis lucifugus	28.31	9.00e-15	72.80
IUUC-Nfi-068304	Neosartorya fischeri	27.93	4.00e-08	51.20
IUUC-Ont-072624	Oreochromis niloticus	27.10	3.00e-16	78.60
IUUC-Ocu-073940	Oryctolagus cuniculus	29.10	7.00e-22	97.40
IUUC-Oba-075447	Oryza barthii	64.29	1.00e-95	342.00
IUUC-Obr-076812	Oryza brachyantha	63.95	3.00e-86	310.00
IUUC-Ogl-077322	Oryza glaberrima	59.59	7.00e-82	296.00
IUUC-Ogu-078221	Oryza glumaepatula	63.95	7.00e-91	326.00
IUUC-Oin-080171	Oryza indica	59.06	4.00e-87	313.00
IUUC-Olo-081041	Oryza longistaminata	51.64	6.00e-71	261.00
IUUC-Ome-081856	Oryza meridionalis	64.97	1.00e-87	315.00
IUUC-Oni-082795	Oryza nivara	64.29	5.00e-91	326.00
IUUC-Opu-083755	Oryza punctata	64.63	2.00e-87	315.00
IUUC-Oru-084198	Oryza rufipogon	64.29	5.00e-91	326.00
IUUC-Osa-085870	Oryza sativa	64.29	5.00e-91	326.00
IUUC-Oga-088600	Otolemur garnettii	28.62	2.00e-20	92.40
IUUC-Oar-090421	Ovis aries	28.05	5.00e-20	90.90
IUUC-Ptr-091509	Pan troglodytes	28.72	2.00e-20	92.80
IUUC-Pan-092468	Papio anubis	28.72	8.00e-21	93.60
IUUC-Pfo-096398	Poecilia formosa	26.63	1.00e-15	76.30
IUUC-Pab-097915	Pongo abelii	28.15	1.00e-20	93.60
IUUC-Pop-098933	Populus trichocarpa	76.45	3.00e-121	426.00
IUUC-Pca-100602	Procavia capensis	41.10	1.00e-08	53.50
IUUC-Ppe-101164	Prunus persica	78.50	4.00e-128	449.00
IUUC-Pva-102466	Pteropus vampyrus	28.20	1.00e-21	96.70
IUUC-Pte-104413	Pyrenophora teres	25.52	3.00e-05	42.00
IUUC-Pyt-104659	Pyrenophora triticirepentis	25.52	4.00e-05	41.20
IUUC-Rno-105226	Rattus norvegicus	28.33	3.00e-20	92.00
IUUC-Sce-106268	Saccharomyces cerevisiae	26.09	1.00e-03	36.20
IUUC-Spo-108285	Schizosaccharomyces pombe	22.73	3.00e-09	55.50
IUUC-Smo-108945	Selaginella moellendorffii	55.45	2.00e-67	248.00
IUUC-Sit-109805	Setaria italica	63.27	2.00e-90	325.00
IUUC-Sly-111445	Solanum lycopersicum	69.39	4.00e-108	383.00
IUUC-Stu-112541	Solanum tuberosum	70.41	9.00e-110	389.00
IUUC-Sar-113380	Sorex araneus	32.16	6.00e-11	60.50
IUUC-Sbi-113948	Sorghum bicolor	63.61	9.00e-92	329.00
IUUC-Tca-121053	Theobroma cacao	77.89	2.00e-125	440.00
IUUC-Tae-124394	Triticum aestivum	65.75	1.00e-99	355.00
IUUC-Tur-126868	Triticum urartu	52.38	2.00e-63	234.00
IUUC-Tbe-127867	Tupaia belangeri	41.10	1.00e-07	50.10
IUUC-Ttr-128543	Tursiops truncatus	26.80	5.00e-22	97.80
IUUC-Vvi-131299	Vitis vinifera	75.17	7.00e-119	419.00
IUUC-Yli-134415	Yarrowia lipolytica	26.09	5.00e-10	57.40
IUUC-Zma-135390	Zea mays	62.59	2.00e-90	324.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence