iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Dre-027581

Ensembl Protein ID

ENSDARP00000076407.4

UniProt Accession

Q1L8N2; Q1L8N2_DANRE

Genbank Protein ID

ENSDARP00000076407

Protein Name

RAD23 homolog A, nucleotide excision repair protein b

Genbank Nucleotide ID

CR751224

Gene Name

rad23ab

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSDARG00000058984.5	ENSDART00000081969.5	ENSDARP00000076407.4

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	1.50e-19	70.4	199	237
ULD/UDP/UBQ/UBQ_PIM	1.10e-23	83.8	2	80

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 3    dedkleqlveMGFdreealqaLraannnleaAveyLldg 41
           +e ++ ++++MG++re+++ aLra++nn+++AveyLl+g
   Q: 199  YENLVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLTG 237
           678999*******************************97 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksks 76
           +++t+ktl++++f+++++e+ tv++lKeki++e+g   +p+  qkLIyaGkiL+Dd +L+e++i+++++v+++v+k+ks
   Q: 2    LTITLKTLQQQTFKVQIDEELTVKALKEKIEEEKGkdgFPAVGQKLIYAGKILNDDIPLKEYKIDEKNFVVVMVTKPKS 80
           58**************************************************************************985 PP

Organism

Danio rerio

Protein Sequence
(Fasta)

MLTITLKTLQ QQTFKVQIDE ELTVKALKEK IEEEKGKDGF PAVGQKLIYA GKILNDDIPL 60
KEYKIDEKNF VVVMVTKPKS AASPQTPTPV PVSETPTHQP TTPVAPPNAS IVPETTPDPA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACATCTCCAC GCGCGCTCAT TCAGGACGCT GTTATTCGCG TGGTCTCGCG CTCAGACACA 60
ATGCTGACGA TAACTCTGAA GACCCTCCAG CAGCAGACGT TTAAAGTGCA GATAGATGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Afu-008877	Aspergillus fumigatus	52.68	2.00e-19	90.10
IUUC-Ame-011107	Astyanax mexicanus	83.87	2.00e-36	146.00
IUUC-Cre-022810	Chlamydomonas reinhardtii	38.25	6.00e-29	121.00
IUUC-Dse-031336	Dothistroma septosporum	57.02	2.00e-18	86.70
IUUC-Ggr-040116	Gaeumannomyces graminis	52.10	2.00e-17	83.20
IUUC-Lch-049719	Latimeria chalumnae	77.17	9.00e-83	300.00
IUUC-Mvi-060220	Microbotryum violaceum	43.61	1.00e-22	101.00
IUUC-Mmu-063929	Mus musculus	53.24	1.00e-85	309.00
IUUC-Mac-064724	Musa acuminata	34.49	9.00e-43	167.00
IUUC-Nfi-068390	Neosartorya fischeri	52.68	2.00e-19	89.70
IUUC-Ncr-068685	Neurospora crassa	50.88	4.00e-25	108.00
IUUC-Ont-072626	Oreochromis niloticus	58.72	6.00e-89	321.00
IUUC-Oga-089075	Otolemur garnettii	52.04	9.00e-83	300.00
IUUC-Pno-095064	Phaeosphaeria nodorum	54.63	1.00e-15	77.80
IUUC-Ssl-108382	Sclerotinia sclerotiorum	49.48	1.00e-17	84.00
IUUC-Sre-114894	Sporisorium reilianum	59.57	7.00e-12	65.50
IUUC-Tru-118651	Takifugu rubripes	48.40	6.00e-85	307.00
IUUC-Tre-121911	Trichoderma reesei	52.94	7.00e-19	88.20
IUUC-Tvi-122617	Trichoderma virens	52.94	5.00e-19	88.60
IUUC-Uma-129484	Ustilago maydis	55.56	6.00e-13	68.90

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence