iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Zma-135727

Ensembl Protein ID

Zm00001d019039_T002

UniProt Accession

B6U670; B6U670_MAIZE

Genbank Protein ID

ACG44853.1; AIB05388.1; ONM52006.1

Protein Name

PHD transcription factor; SHL1

Genbank Nucleotide ID

EU972735; KJ727897; CM007650

Gene Name

PHD3; ZEAMMB73_Zm00001d019039

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d019039	Zm00001d019039_T001	Zm00001d019039_T001
Zm00001d019039	Zm00001d019039_T002	Zm00001d019039_T002

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	1.50e-08	36.7	143	191

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 3    vClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           +C  C+ +++ ++ +++Ce+C++wfHpaC +++++e ++ ++ ++C+ C++
   Q: 143  FC-KCEMPYNPDDLMIQCEECSDWFHPACIGMTIKEAKKLEH-FFCQTCTA 191
           78.7999**************************777777776.******86 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MAGKSRPPKR ILESYTIKGS DRVIKPGDCV LMRASDASKP PYVARVEAIE AAGSRGTNVR 60
VRVRWYYRPE ESIGGRRPFH GSKEVFLSDH YDVQSADTIE GKCNVHSFRS YTKLDSVNAE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCGACCGCGA GCGCCTCCGC ATTTCGAACC AAAGGGGGCA GAACTGAGAG ATCGAGAGAA 60
ATAATAAAAA AAAATCCGTC TTCTTGTGGT CTTCTCCAAA CCCTAGCGCC CCCGGCCCCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001025--BAH_dom
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51038--BAH
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF01426--BAH
PF00628--PHD

SMART

SM00439--BAH
SM00249--PHD

Gene Ontology

GO:0005634--C:nucleus
GO:0003682--F:chromatin binding
GO:0000976--F:transcription regulatory region sequence-specific DNA binding
GO:0008270--F:zinc ion binding
GO:0006325--P:chromatin organization
GO:0035067--P:negative regulation of histone acetylation
GO:0009791--P:post-embryonic development
GO:2000028--P:regulation of photoperiodism, flowering
GO:0006355--P:regulation of transcription, DNA-templated

KEGG

zma:100285536

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Bdi-015071	Brachypodium distachyon	90.83	1.00e-119	421.00
IUUC-Bra-017900	Brassica rapa	66.67	2.00e-86	311.00
IUUC-Cre-022934	Chlamydomonas reinhardtii	49.10	5.00e-48	182.00
IUUC-Csv-026099	Ciona savignyi	36.51	3.00e-08	51.60
IUUC-Gma-042998	Glycine max	69.12	2.00e-92	330.00
IUUC-Hvu-047723	Hordeum vulgare	79.28	2.00e-102	364.00
IUUC-Lpe-051138	Leersia perrieri	96.15	3.00e-121	426.00
IUUC-Mtr-058621	Medicago truncatula	69.41	6.00e-91	325.00
IUUC-Oba-075855	Oryza barthii	95.67	9.00e-121	425.00
IUUC-Obr-076353	Oryza brachyantha	79.37	4.00e-116	411.00
IUUC-Ogl-077547	Oryza glaberrima	92.23	5.00e-114	402.00
IUUC-Ogu-078224	Oryza glumaepatula	78.08	1.00e-101	361.00
IUUC-Oin-079179	Oryza indica	95.39	4.00e-125	439.00
IUUC-Olo-080461	Oryza longistaminata	96.20	8.00e-108	382.00
IUUC-Ome-081714	Oryza meridionalis	95.31	1.00e-121	427.00
IUUC-Oni-082099	Oryza nivara	95.31	1.00e-121	427.00
IUUC-Opu-083906	Oryza punctata	78.54	4.00e-102	362.00
IUUC-Oru-085087	Oryza rufipogon	78.08	5.00e-102	362.00
IUUC-Osa-085620	Oryza sativa	95.39	4.00e-125	439.00
IUUC-Ppa-095639	Physcomitrella patens	62.38	2.00e-75	274.00
IUUC-Pop-098853	Populus trichocarpa	70.51	4.00e-92	329.00
IUUC-Pca-100779	Procavia capensis	30.17	2.00e-11	64.70
IUUC-Ppe-101818	Prunus persica	66.82	4.00e-89	320.00
IUUC-Ssl-108594	Sclerotinia sclerotiorum	36.36	5.00e-04	40.80
IUUC-Sit-110445	Setaria italica	98.16	2.00e-127	447.00
IUUC-Sly-110932	Solanum lycopersicum	68.66	5.00e-91	326.00
IUUC-Stu-112357	Solanum tuberosum	67.74	4.00e-89	320.00
IUUC-Sbi-113989	Sorghum bicolor	99.08	1.00e-128	451.00
IUUC-Sre-115140	Sporisorium reilianum	57.14	2.00e-09	57.80
IUUC-Tca-121689	Theobroma cacao	70.19	4.00e-90	323.00
IUUC-Tae-123050	Triticum aestivum	91.24	2.00e-121	427.00
IUUC-Uma-129425	Ustilago maydis	46.81	2.00e-07	51.60

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence