iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	9.60e-29	100.2	63	134

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 1    evpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceen 72
           ++p+ f+CpIsle+M+dPv+l++G+ty+r +I+kw++ g+ tcP+t+q+l +++++Pn+tl++li  w +++
   Q: 63   DIPSVFICPISLEPMQDPVTLCTGQTYERLNIHKWFNLGHLTCPTTMQELWDDTVTPNKTLHHLIYTWFSQK 134
           69******************************************************************9987 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase.

Protein Sequence
(Fasta)

MPMFQPLKRD GLIGFEGGGD GQVLDLDTAV KDGVLGGVNG GGVGVVDEKL DLKKMIKELD 60
LQDIPSVFIC PISLEPMQDP VTLCTGQTYE RLNIHKWFNL GHLTCPTTMQ ELWDDTVTPN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGCGAGTCGA GAGGACTAAA TGACCGGCTA TAACCAGTGA ATTCACCGGT CACCTTATCT 60
TTAATTTTTT TAGATTTTCC ACCCGAATCT TTCAACAAAT CTTTAATCTC TCCCCTTTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0061630--F:ubiquitin protein ligase activity
GO:0071472--P:cellular response to salt stress
GO:1901001--P:negative regulation of response to salt stress

KEGG

ath:AT3G49810

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000254	Aegilops tauschii	59.24	2.00e-142	498.00
IUUC-Atr-002608	Amborella trichopoda	65.11	1.00e-148	518.00
IUUC-Aly-005542	Arabidopsis lyrata	96.21	0.00e+00	770.00
IUUC-Bdi-014966	Brachypodium distachyon	59.69	4.00e-146	510.00
IUUC-Bol-015410	Brassica oleracea	93.30	0.00e+00	736.00
IUUC-Bra-017594	Brassica rapa	94.16	0.00e+00	708.00
IUUC-Gma-043270	Glycine max	73.27	0.00e+00	652.00
IUUC-Hvu-047172	Hordeum vulgare	59.33	5.00e-139	486.00
IUUC-Lpe-050937	Leersia perrieri	57.96	1.00e-127	448.00
IUUC-Mtr-058060	Medicago truncatula	73.84	0.00e+00	648.00
IUUC-Mac-065362	Musa acuminata	64.78	9.00e-150	522.00
IUUC-Obr-076221	Oryza brachyantha	59.69	1.00e-135	475.00
IUUC-Ogl-077601	Oryza glaberrima	60.36	3.00e-122	431.00
IUUC-Ogu-078802	Oryza glumaepatula	60.13	3.00e-131	461.00
IUUC-Oin-079670	Oryza indica	60.13	6.00e-122	430.00
IUUC-Olo-080252	Oryza longistaminata	64.10	1.00e-79	288.00
IUUC-Ome-081565	Oryza meridionalis	60.13	6.00e-122	430.00
IUUC-Oni-082638	Oryza nivara	60.13	6.00e-122	430.00
IUUC-Opu-083387	Oryza punctata	60.13	1.00e-122	432.00
IUUC-Oru-084585	Oryza rufipogon	60.13	6.00e-122	430.00
IUUC-Osa-086056	Oryza sativa	60.13	6.00e-122	430.00
IUUC-Pop-098956	Populus trichocarpa	67.41	5.00e-157	546.00
IUUC-Ppe-101617	Prunus persica	74.83	3.00e-180	623.00
IUUC-Sit-109761	Setaria italica	60.13	2.00e-135	474.00
IUUC-Sly-111041	Solanum lycopersicum	60.00	9.00e-141	492.00
IUUC-Stu-112727	Solanum tuberosum	65.11	7.00e-168	582.00
IUUC-Sbi-113971	Sorghum bicolor	61.02	7.00e-143	499.00
IUUC-Tca-121202	Theobroma cacao	77.16	0.00e+00	687.00
IUUC-Tae-123424	Triticum aestivum	59.24	2.00e-142	498.00
IUUC-Tur-126157	Triticum urartu	64.67	3.00e-61	228.00
IUUC-Vvi-131367	Vitis vinifera	76.56	0.00e+00	644.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence