iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Mac-065245

Ensembl Protein ID

GSMUA_Achr1P08830_001

UniProt Accession

M0RY92; M0RY92_MUSAM

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
GSMUA_Achr1G08830_001	GSMUA_Achr1T08830_001	GSMUA_Achr1P08830_001

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.40e-34	115.6	184	219
UBD/Beta-Prp	7.80e-56	190.3	14	252

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           H++ ++c++f +   ll++Gs D t+k WDl t+ l
   Q: 184  HNGQIRCIDFhPHeFLLATGSADRTVKFWDLETFEL 219
           99********9776789**************99876 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghe 94
           +h s ++cv++ ++++++++tg++d+++ +w + +++ l slsgh + v +v f++ + + + gs+ ++ik+wdl+  k+v+tl+gh 
   Q: 14   AHASDVNCVAIgKKSSRVFVTGGEDRKVNLWAIGKPTPLLSLSGHMGSVESVAFDSAEVLVLGGSSTGIIKLWDLEEAKIVRTLTGHR 101
           567778889999*********************************************9899999999********************* PP
   S: 95   dsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtds 182
           ++ +s++f+p g++++sGs d  +++wd++++ c++ t +gh g ++ +++ pdg+ +v+G++D++v+lWdl  gkll++++  h+++
   Q: 102  SNCTSVEFHPFGEFFASGSLDTDLKIWDIRKKGCIH-TYKGHAGGIQKIRFTPDGRWVVTGGADNMVKLWDLTAGKLLHDFKF-HNGQ 187
           ************************************.*********************************************9.**** PP
   S: 183  vyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiri 248
           +++++f++  + l++gs d+tvk+wdl+t e + ++    + v+s+ f+p+++ l +g  + ++++
   Q: 188  IRCIDFHPHEFLLATGSADRTVKFWDLETFELIGSVGPEATGVCSMIFHPDGKTLFCG-LEATLKV 252
           ******************************************************9998.4666666 PP

Organism

Musa acuminata

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MALNRGYKLQ EFVAHASDVN CVAIGKKSSR VFVTGGEDRK VNLWAIGKPT PLLSLSGHMG 60
SVESVAFDSA EVLVLGGSST GIIKLWDLEE AKIVRTLTGH RSNCTSVEFH PFGEFFASGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTGAGCTCGA CTCCAATCGC GCACCGTTGG GAAGCTCCGA CTCGATTCGC CGGAGAGAGC 60
CCGAGCTGGA GACATGGCGC TGAATCGTGG TTACAAGCTC CGTATCCTTC TTGTCTTTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000869	Aegilops tauschii	48.38	8.00e-156	543.00
IUUC-Aly-005897	Arabidopsis lyrata	63.89	1.00e-143	503.00
IUUC-Ath-006624	Arabidopsis thaliana	67.04	2.00e-153	536.00
IUUC-Bdi-014531	Brachypodium distachyon	54.40	1.00e-178	619.00
IUUC-Bol-015355	Brassica oleracea	74.92	1.00e-150	526.00
IUUC-Bra-017265	Brassica rapa	63.29	6.00e-152	531.00
IUUC-Hvu-047729	Hordeum vulgare	77.15	1.00e-160	559.00
IUUC-Oba-075016	Oryza barthii	53.32	2.00e-154	540.00
IUUC-Obr-076138	Oryza brachyantha	55.37	0.00e+00	642.00
IUUC-Ogl-077401	Oryza glaberrima	55.45	5.00e-179	620.00
IUUC-Ogu-078062	Oryza glumaepatula	55.40	5.00e-177	614.00
IUUC-Oin-080042	Oryza indica	55.25	5.00e-177	614.00
IUUC-Olo-080713	Oryza longistaminata	53.65	3.00e-155	542.00
IUUC-Oni-082473	Oryza nivara	54.94	4.00e-176	611.00
IUUC-Oru-085183	Oryza rufipogon	55.40	3.00e-177	615.00
IUUC-Osa-085801	Oryza sativa	55.45	1.00e-179	622.00
IUUC-Pop-100006	Populus trichocarpa	70.86	8.00e-156	543.00
IUUC-Sit-110364	Setaria italica	53.00	0.00e+00	627.00
IUUC-Sbi-114389	Sorghum bicolor	76.79	7.00e-160	557.00
IUUC-Tae-125438	Triticum aestivum	54.55	0.00e+00	631.00
IUUC-Tur-126181	Triticum urartu	52.14	9.00e-178	616.00
IUUC-Vvi-130939	Vitis vinifera	69.02	1.00e-156	545.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence