iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sit-110364

Ensembl Protein ID

Si000309m

UniProt Accession

K3XEJ2; K3XEJ2_SETIT

Genbank Protein ID

KQL07243.1

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Genbank Nucleotide ID

CM003532

Gene Name

LOC101758399; SETIT_000309mg

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Si000309m.g	Si000309m	Si000309m

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.60e-34	116.7	185	220
UBD/Beta-Prp	4.10e-58	197.8	12	185

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           H++ ++c++f +   ll++Gs D t+k WDl t+ l
   Q: 185  HSGQINCIDFhPQeFLLATGSADRTVKFWDLETFEL 220
           9*********9665889**************99876 PP

UBD/Beta-Prp

   S: 89   tlkghedsvlslsfsp.sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvysls 187
            + +h+++v+sl++ + s+ ++++G++dr +++w + +++ l   lsgh+++v +v++++ + l+ +Gs ++ ++lWdl+ +k++r ltg h  s + ++
   Q: 12   EFVAHDADVRSLAIGKkSSRVFITGGNDRKVNLWAIGKQTPLL-SLSGHTSAVETVQFDSAEVLVLAGSSNGSIKLWDLEEAKVVRSLTG-HRLSCTAVE 109
           5678************666************************.*********************************************9.********* PP
   S: 188  fdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlh 263
           f++ g++++sgs d+++k+wd++++ c++t++gh+  +k +rf+p++ ++v+g++D  +++Wdl+ g+ll+ ++ h
   Q: 110  FHPFGEFFASGSSDTDLKIWDIKKKGCIHTYKGHRGAIKKIRFTPDGRWVVTGGEDSIVKVWDLTAGKLLHDFKFH 185
           **********************************************************************999765 PP

Organism

Setaria italica

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MDPEKRGYRL QEFVAHDADV RSLAIGKKSS RVFITGGNDR KVNLWAIGKQ TPLLSLSGHT 60
SAVETVQFDS AEVLVLAGSS NGSIKLWDLE EAKVVRSLTG HRLSCTAVEF HPFGEFFASG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGACCCCG AGAAGCGCGG CTACAGGCTC CGTATCCTTT TTGCTTCGTC TCGGAGTTGC 60
CGCTCTGTTT TCTTGATTCG ATTTGGCTCG CAGGAGGAAG AATCTGCCAG CAATCCGGGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG

sita:101758399

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000869	Aegilops tauschii	68.08	0.00e+00	1135.00
IUUC-Bdi-014531	Brachypodium distachyon	78.48	0.00e+00	1296.00
IUUC-Dse-031558	Dothistroma septosporum	29.13	4.00e-27	115.00
IUUC-Gma-043323	Glycine max	43.97	0.00e+00	677.00
IUUC-Hvu-047729	Hordeum vulgare	76.86	0.00e+00	954.00
IUUC-Mac-065245	Musa acuminata	54.25	0.00e+00	638.00
IUUC-Oba-075016	Oryza barthii	75.54	0.00e+00	1124.00
IUUC-Obr-076138	Oryza brachyantha	81.44	0.00e+00	1383.00
IUUC-Ogl-077401	Oryza glaberrima	80.00	0.00e+00	1348.00
IUUC-Ogu-078062	Oryza glumaepatula	74.88	0.00e+00	1267.00
IUUC-Oin-080042	Oryza indica	74.77	0.00e+00	1265.00
IUUC-Olo-080713	Oryza longistaminata	78.10	0.00e+00	1167.00
IUUC-Ome-081192	Oryza meridionalis	75.00	0.00e+00	1083.00
IUUC-Oni-082473	Oryza nivara	74.83	0.00e+00	1257.00
IUUC-Opu-083293	Oryza punctata	72.00	0.00e+00	1167.00
IUUC-Oru-085183	Oryza rufipogon	74.77	0.00e+00	1264.00
IUUC-Osa-085801	Oryza sativa	80.00	0.00e+00	1347.00
IUUC-Pte-104275	Pyrenophora teres	31.39	4.00e-29	122.00
IUUC-Sbi-114389	Sorghum bicolor	80.35	0.00e+00	1322.00
IUUC-Tae-125438	Triticum aestivum	78.90	0.00e+00	1301.00
IUUC-Tur-126181	Triticum urartu	73.75	0.00e+00	1214.00
IUUC-Tbe-128071	Tupaia belangeri	31.67	3.00e-32	132.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence