iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	7.70e-09	36.8	114	156

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C+iCl df+dg  ++vlp C+H fh  C+  w         + +CP+Cr
   Q: 114  CLICLGDFEDGekVRVLPkCNHGFHVRCIDTW------LLSRSSCPTCR 156
           ********77666*******************......888899****8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MGRLLLEPQA NAPANANPKP KGGINDTYFD TNMVIILAAL LCALICALSL NSALRCVLRI 60
TRRFTSDDQV SNASNANANL GRLAAATGLK KQALKQIPVG LYGSGIIDMK ATECLICLGD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAAAGTGAC CATTCACTTG CTACATATAT AAATAATAAC AATGATATGG TTTTTTTAAA 60
ACCAAAGAAT TTCTTGGACC AACCACATCA TCATATCTCT CAAAAGAGAG TCGCCCATAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT3G10910

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000754	Aegilops tauschii	60.00	6.00e-24	101.00
IUUC-Atr-003049	Amborella trichopoda	55.70	1.00e-33	135.00
IUUC-Aly-006386	Arabidopsis lyrata	95.60	5.00e-69	252.00
IUUC-Bol-015294	Brassica oleracea	86.31	1.00e-64	238.00
IUUC-Bra-016992	Brassica rapa	85.71	1.00e-68	251.00
IUUC-Cel-018152	Caenorhabditis elegans	46.77	4.00e-14	70.10
IUUC-Csv-026239	Ciona savignyi	41.33	3.00e-12	63.90
IUUC-Gma-043926	Glycine max	60.84	5.00e-40	156.00
IUUC-Hvu-047249	Hordeum vulgare	49.56	2.00e-26	110.00
IUUC-Mac-065481	Musa acuminata	58.18	4.00e-37	146.00
IUUC-Oba-075992	Oryza barthii	56.03	1.00e-30	126.00
IUUC-Ogl-077735	Oryza glaberrima	56.03	1.00e-30	125.00
IUUC-Ogu-078127	Oryza glumaepatula	55.32	8.00e-30	123.00
IUUC-Olo-080939	Oryza longistaminata	55.32	9.00e-30	122.00
IUUC-Ome-081946	Oryza meridionalis	56.03	1.00e-30	125.00
IUUC-Oni-083084	Oryza nivara	56.03	2.00e-30	125.00
IUUC-Opu-084141	Oryza punctata	53.90	4.00e-30	124.00
IUUC-Oru-084596	Oryza rufipogon	56.03	1.00e-30	126.00
IUUC-Osa-085865	Oryza sativa	56.03	1.00e-30	125.00
IUUC-Pop-099640	Populus trichocarpa	60.71	5.00e-39	153.00
IUUC-Ppe-101375	Prunus persica	62.50	3.00e-38	150.00
IUUC-Sly-111371	Solanum lycopersicum	56.18	1.00e-39	155.00
IUUC-Stu-112741	Solanum tuberosum	59.38	4.00e-38	150.00
IUUC-Sbi-114132	Sorghum bicolor	77.78	5.00e-19	86.70
IUUC-Tca-120911	Theobroma cacao	65.24	2.00e-43	168.00
IUUC-Tur-126629	Triticum urartu	61.73	4.00e-27	112.00
IUUC-Tme-127191	Tuber melanosporum	54.55	5.00e-13	69.30

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence