iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
RAID2
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 adaptor/Cullin RING/SCF/F-box	F-box	15992545

Organism

Arabidopsis thaliana

Functional Description
(View)

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Confers sensitivity to the virulent bacterial pathogen P.syringae (By similarity). Auxin receptor that mediates Aux/IAA proteins proteasomal degradation and auxin-regulated transcription. Involved in embryogenesis regulation by auxin.

Protein Sequence
(Fasta)

MNYFPDEVIE HVFDFVTSHK DRNAISLVCK SWYKIERYSR QKVFIGNCYA INPERLLRRF 60
PCLKSLTLKG KPHFADFNLV PHEWGGFVLP WIEALARSRV GLEELRLKRM VVTDESLELL 120

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Nucleotide Sequence
(Fasta)

GCCATTTCCC ATCAACGGTC AAGATCCATC TCCTCTTCTT CTCCTTCAAA CCATTCCCCA 60
CCGTTAGATC ATCTCCAAAC CTAACCACGG TTCATTCTTT AACCACGGTT TGTTTCGGTC 120

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Sequence Source

Ensembl

Keyword

KW-0927--Auxin signaling pathway
KW-0181--Complete proteome
KW-0217--Developmental protein
KW-0539--Nucleus
KW-0611--Plant defense
KW-1185--Reference proteome
KW-0833--Ubl conjugation pathway

Interpro

IPR001810--F-box_dom
IPR032675--L_dom-like
IPR006553--Leu-rich_rpt_Cys-con_subtyp

Pfam

PF00646--F-box

SMART

SM00256--FBOX
SM00367--LRR_CC

Gene Ontology

GO:0005634--C:nucleus
GO:0019005--C:SCF ubiquitin ligase complex
GO:0005774--C:vacuolar membrane
GO:0010011--F:auxin binding
GO:0000822--F:inositol hexakisphosphate binding
GO:0009734--P:auxin-activated signaling pathway
GO:0006952--P:defense response
GO:0010152--P:pollen maturation
GO:0016567--P:protein ubiquitination
GO:0048443--P:stamen development

KEGG

ath:AT3G26810

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000251	Aegilops tauschii	62.85	0.00e+00	692.00
IUUC-Aly-005635	Arabidopsis lyrata	98.78	0.00e+00	1177.00
IUUC-Bdi-014864	Brachypodium distachyon	65.91	0.00e+00	752.00
IUUC-Bol-015221	Brassica oleracea	92.35	0.00e+00	1092.00
IUUC-Bra-017679	Brassica rapa	93.03	0.00e+00	1100.00
IUUC-Gma-043882	Glycine max	76.35	0.00e+00	888.00
IUUC-Hvu-047360	Hordeum vulgare	66.49	0.00e+00	752.00
IUUC-Lpe-051628	Leersia perrieri	66.26	0.00e+00	758.00
IUUC-Oba-075353	Oryza barthii	66.67	0.00e+00	758.00
IUUC-Obr-076616	Oryza brachyantha	66.84	0.00e+00	762.00
IUUC-Ogl-077636	Oryza glaberrima	66.84	0.00e+00	762.00
IUUC-Ogu-078337	Oryza glumaepatula	66.67	0.00e+00	758.00
IUUC-Oin-079789	Oryza indica	66.84	0.00e+00	762.00
IUUC-Olo-080406	Oryza longistaminata	67.04	0.00e+00	721.00
IUUC-Ome-081861	Oryza meridionalis	66.84	0.00e+00	761.00
IUUC-Oni-082544	Oryza nivara	66.67	0.00e+00	758.00
IUUC-Opu-083530	Oryza punctata	66.67	0.00e+00	759.00
IUUC-Oru-084887	Oryza rufipogon	66.67	0.00e+00	756.00
IUUC-Osa-085607	Oryza sativa	66.84	0.00e+00	761.00
IUUC-Olu-087672	Ostreococcus lucimarinus	34.67	1.90e-02	32.30
IUUC-Pop-099684	Populus trichocarpa	76.00	0.00e+00	902.00
IUUC-Ppe-101640	Prunus persica	79.30	0.00e+00	934.00
IUUC-Sit-110014	Setaria italica	66.96	0.00e+00	780.00
IUUC-Sbi-114607	Sorghum bicolor	66.78	0.00e+00	777.00
IUUC-Tca-121184	Theobroma cacao	78.43	0.00e+00	882.00
IUUC-Tae-124534	Triticum aestivum	66.49	0.00e+00	753.00
IUUC-Tur-126235	Triticum urartu	66.32	0.00e+00	750.00
IUUC-Vvi-131655	Vitis vinifera	77.04	0.00e+00	912.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence