iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Vvi-131259

UUCD1 version

UUC-ViV-00562

Ensembl Protein ID

VIT_12s0028g03860.t01

UniProt Accession

F6H5B3; F6H5B3_VITVI

Genbank Protein ID

CCB47274.1

Protein Name

Putative uncharacterized protein

Genbank Nucleotide ID

FN595235

Gene Name

RMA1; VIT_12s0028g03860

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VIT_12s0028g03860	VIT_12s0028g03860.t01	VIT_12s0028g03860.t01

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	2.00e-08	35.2	140	189
E3 activity/RING/U-box	1.10e-06	29.2	138	200

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkw.....pglknssskefrCPlCr 46
           C iCl+  +d p+v+ CgH+f+  C++kw         n  +k+ +CP+C+
   Q: 140  CNICLDFVQD-PVVTLCGHLFCWPCIYKWlhfqsISTENPDQKHPQCPVCK 189
           99********.9999**************9999866677789999*****7 PP

E3 activity/RING/U-box

   S: 6    flCpIslelMrdPvvlpsGitydrssIekwl..........asggk...tcPvtrqplteedlvPn 58
           f C I l+  +dPvv+ +G+ +   +I kwl          +   +   +cPv+++++++++l+P 
   Q: 138  FDCNICLDFVQDPVVTLCGHLFCWPCIYKWLhfqsistenpD---QkhpQCPVCKAEVSDTTLIPL 200
           99*****************************88666555444...0566***************96 PP

Organism

Vitis vinifera

Protein Sequence
(Fasta)

MASSPSFPTN PLQPSTSSFY LQKLFFFSLY TTHFINLQFV LPSPKALLLS IEIFFCKNKQ 60
KQSFCLFGIS IFVGWLRFVL FWLLGKTPLK KDQKAMEQYF QEAMPQNDLN KEDGSSMENW 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTTCTT CTCCTTCATT CCCTACCAAC CCTCTCCAGC CTTCAACCTC TTCTTTCTAC 60
CTTCAGAAGC TTTTCTTTTT CTCTCTCTAC ACAACCCATT TCATCAATCT TCAATTCGTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0036513--C:Derlin-1 retrotranslocation complex
GO:0016021--C:integral component of membrane
GO:1904264--F:ubiquitin protein ligase activity involved in ERAD pathway
GO:0044390--F:ubiquitin-like protein conjugating enzyme binding
GO:0008270--F:zinc ion binding
GO:0071712--P:ER-associated misfolded protein catabolic process
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006069	Arabidopsis lyrata	45.54	2.00e-50	191.00
IUUC-Ath-006807	Arabidopsis thaliana	41.87	5.00e-53	199.00
IUUC-Bol-015157	Brassica oleracea	40.41	2.00e-45	174.00
IUUC-Bra-017909	Brassica rapa	41.13	2.00e-48	184.00
IUUC-Gma-044004	Glycine max	51.43	5.00e-69	253.00
IUUC-Mtr-058147	Medicago truncatula	51.63	3.00e-66	243.00
IUUC-Mvi-060316	Microbotryum violaceum	50.79	2.00e-13	68.20
IUUC-Olo-081070	Oryza longistaminata	40.00	2.00e-25	108.00
IUUC-Opu-083549	Oryza punctata	34.72	1.00e-26	112.00
IUUC-Pop-099799	Populus trichocarpa	61.29	2.00e-86	311.00
IUUC-Ppe-101414	Prunus persica	59.44	3.00e-78	283.00
IUUC-Pyt-104640	Pyrenophora triticirepentis	37.11	2.00e-12	65.50
IUUC-Sly-111236	Solanum lycopersicum	52.50	9.00e-59	218.00
IUUC-Stu-112674	Solanum tuberosum	50.83	2.00e-57	214.00
IUUC-Sbi-114178	Sorghum bicolor	40.09	2.00e-32	131.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence