iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-113820

UUCD1 version

UUC-SoB-00066

Ensembl Protein ID

Sb03g025870.1

UniProt Accession

A0A1B6Q4F6; A0A1B6Q4F6_SORBI

Genbank Protein ID

KXG32765.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000762

Gene Name

SORBI_003G195900

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb03g025870	Sb03g025870.1	Sb03g025870.1
Sb03g025870	Sb03g025870.2	Sb03g025870.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.40e-32	111.1	949	986
UBD/Beta-Prp	2.90e-66	224.5	820	1066

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlrtgvllk 37
           gH+++v++++  s+ +++++s+Dgt+k+WD+rt++++ 
   Q: 949  GHEAPVSSVRMlSGERVLTASHDGTVKMWDVRTDTCVA 986
           8*********98889********************985 PP

UBD/Beta-Prp

   S: 18   f..spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgk............ilvtgseDrtikvwdls..tgkcvhtlkghed 95
           f  + d + +at++    i   + +t++ +r+l gh++++ta+ +  +++            ++++gs+D t+k+wd+s   ++   tlkgh++
   Q: 820  FnrASDANAVATTG-KTDISAAQKKTQTNMRTLRGHTGAITALHCVTRKEvwdlvgdredagFFISGSTDCTVKIWDPSlrGSELRATLKGHTR 912
           43367777788886.445555555566669*********66666655555555555566668**************766669************ PP
   S: 96   svlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfd 189
            ++++s+++   k+vsG +d+ + vwd +t + le  l+gh++ v++v++ + g  + ++s D+tv++Wd++t++++ t     +++v ++++d
   Q: 913  AIRTISSDR--GKIVSGADDQSVIVWDKQTFKLLE-ELKGHEAPVSSVRMLS-GERVLTASHDGTVKMWDVRTDTCVATVGR-CQSAVLCMEYD 1001
           *********..***********************9.**************99.99*************************76.99********* PP
   S: 190  sngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdl 256
           ++   l+++++d t  +wd+++++ + +l+ght++++s+r++  ++ +++gs+D + r+W l  g++
   Q: 1002 DSTGILAAAGRDVTAHVWDIRSSKQMFKLQGHTKWIRSMRMT--GDTIITGSDDWTARVWSLNRGTC 1066
           ******************************************..****************9998876 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MGSSSRIFEY FVVCGLGPEI RSLDGIKGFH GVEEMYMSAF LDQFPPSNHA LYPPPPPQLP 60
TCVLPAGVRI YSSGLDTDDV STYPRSYPIV LTEGDGSKIY VSCIAFRDPI CEDIIEAYQI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCGACCGCCT TCCTCCCTCC TCCCGCTCGC GCGCGGAGCG AGCCGACACC ATAGGGAGAA 60
GCAGGCGCCA ACCGTTTCAC CGAGGATACC TCCCTGGAGG CCGGTGATCT CCGGTTCCGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR005112--dDENN_dom
IPR001194--DENN_dom
IPR020472--G-protein_beta_WD-40_rep
IPR005113--uDENN_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50947--DDENN
PS50211--DENN
PS50946--UDENN
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF03455--dDENN
PF02141--DENN
PF03456--uDENN
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00801--dDENN
SM00799--DENN
SM00800--uDENN
SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002593	Amborella trichopoda	73.31	0.00e+00	1713.00
IUUC-Aly-005508	Arabidopsis lyrata	71.17	0.00e+00	1678.00
IUUC-Ath-007614	Arabidopsis thaliana	70.70	0.00e+00	1703.00
IUUC-Afl-008730	Aspergillus flavus	28.74	3.00e-27	116.00
IUUC-Bgr-012075	Blumeria graminis	30.13	3.00e-28	119.00
IUUC-Bdi-014863	Brachypodium distachyon	91.04	0.00e+00	2213.00
IUUC-Bol-015997	Brassica oleracea	70.78	0.00e+00	1664.00
IUUC-Bra-017065	Brassica rapa	70.94	0.00e+00	1667.00
IUUC-Cme-027168	Cyanidioschyzon merolae	27.27	1.00e-20	94.40
IUUC-Gma-042682	Glycine max	73.07	0.00e+00	1793.00
IUUC-Hvu-047377	Hordeum vulgare	94.60	0.00e+00	627.00
IUUC-Lpe-051109	Leersia perrieri	90.36	0.00e+00	2072.00
IUUC-Mtr-058651	Medicago truncatula	72.76	0.00e+00	1765.00
IUUC-Mac-065420	Musa acuminata	79.62	0.00e+00	1897.00
IUUC-Oba-075961	Oryza barthii	87.68	0.00e+00	1645.00
IUUC-Obr-076806	Oryza brachyantha	91.19	0.00e+00	2203.00
IUUC-Ogu-078716	Oryza glumaepatula	84.95	0.00e+00	1976.00
IUUC-Oin-079809	Oryza indica	79.90	0.00e+00	1823.00
IUUC-Olo-080386	Oryza longistaminata	86.04	0.00e+00	2088.00
IUUC-Ome-081107	Oryza meridionalis	88.45	0.00e+00	2088.00
IUUC-Oni-082213	Oryza nivara	82.73	0.00e+00	1924.00
IUUC-Opu-083850	Oryza punctata	88.43	0.00e+00	1293.00
IUUC-Oru-084982	Oryza rufipogon	89.01	0.00e+00	2018.00
IUUC-Osa-086141	Oryza sativa	91.52	0.00e+00	2164.00
IUUC-Olu-087744	Ostreococcus lucimarinus	30.66	2.00e-39	157.00
IUUC-Ppa-095259	Physcomitrella patens	52.58	0.00e+00	1251.00
IUUC-Pop-099233	Populus trichocarpa	75.56	0.00e+00	1812.00
IUUC-Pca-100843	Procavia capensis	30.25	1.00e-26	113.00
IUUC-Ppe-101883	Prunus persica	72.42	0.00e+00	1419.00
IUUC-Sce-106314	Saccharomyces cerevisiae	26.69	4.00e-21	95.90
IUUC-Smo-109523	Selaginella moellendorffii	57.58	0.00e+00	1358.00
IUUC-Sit-109736	Setaria italica	96.02	0.00e+00	2323.00
IUUC-Sly-111483	Solanum lycopersicum	75.00	0.00e+00	1773.00
IUUC-Sre-114901	Sporisorium reilianum	29.46	7.00e-26	112.00
IUUC-Tca-121657	Theobroma cacao	76.01	0.00e+00	1793.00
IUUC-Tae-124598	Triticum aestivum	90.06	0.00e+00	2234.00
IUUC-Tur-126080	Triticum urartu	89.59	0.00e+00	1439.00
IUUC-Tme-127021	Tuber melanosporum	29.10	3.00e-30	125.00
IUUC-Uma-129449	Ustilago maydis	30.70	1.00e-27	118.00
IUUC-Vda-129802	Verticillium dahliae	28.85	9.00e-28	117.00
IUUC-Vvi-131550	Vitis vinifera	75.56	0.00e+00	1768.00
IUUC-Yli-134429	Yarrowia lipolytica	30.09	3.00e-30	125.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence