iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114259

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000766

Gene Name

SORBI_007G159900

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb07g023330	Sb07g023330.1	Sb07g023330.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	5.90e-76	256.6	465	770

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 1    tGlkNlgNtCYmNSvLQcLsnipelrellle.kkkeklneenpkepkgellkslqklfeelwkskkkavsprellkalkkeaeefsgyeqqDaqEf 95
           +Gl+N+gN+CY N+vLQcL+++++l+ +lle  ++++++     ++  +++++++kl+ e  k++k+a sp+ +l++l+++ +++   +q+Da+Ef
   Q: 465  FGLHNVGNSCYANAVLQCLMFTRPLTTYLLEgLHSKNCS-----QKGWCFMCEFEKLIVEG-KRRKTALSPTGILSHLHDIGSSLGPGKQEDAHEF 554
           6******************************55555555.....5678**********888.********************************** PP
   S: 96   laflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvssreepfldlslpvpgkeetkkeslqdcL 191
           l++ +d++++ + k          e+      ++    + +++++l++ +F+g l+s+ikc +c+ +s++ ep+ldl++++ g+ +    sl+++L
   Q: 555  LRYAIDAMQSVCMK----------EA------SKGGVIQSMEETTLVQLIFGGYLRSKIKCSRCHVSSEQCEPMLDLTVEIDGDIS----SLDEAL 630
           ************22..........22......234456788999*****************************************6....8***** PP
   S: 192  esftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksrekinkkvefpleLdlspfctspeekqkekkkYeLiavvvHs 287
           e ft++e l+genky+c++ck++ +a+kkl++++ P+vL++ LkR+   ++ ++  ki+k + fp++L++ ++++ ++++   +  Y+L+avvvH+
   Q: 631  ERFTSTEVLDGENKYHCSRCKSYERAKKKLTIEEAPNVLTIALKRY---QS-GKFGKISKAIRFPDTLNMGHYMNPDTDDI--SPVYSLYAVVVHH 720
           **********************************************...33.4557*******************988777..9***********9 PP
   S: 288  Gsls...sGHYvayvknekgkWllfdDskVtevkeeevleetgstaYvlfYkr 337
             ++   sGHYv+yvk+++gkW++ dDs+V++v+ ++v +   + aY+l+Y r
   Q: 721  DVMNaafSGHYVCYVKDTQGKWFKADDSQVKPVSLDNVMS---KCAYMLLYAR 770
           95443349********************************...9*******87 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MEEEAESSSS AAAALWLAVV ALVVVPAVAL LVRARWRRAA ARREEVRRLA RLAAEEAELA 60
ERESVLAYYS ELFPGVVHAA EVPVAPEWGP PPVVVVPGPA AQEEFDAQPQ PQPPVGAKGV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAGGAGG AGGCGGAGTC GTCGTCCTCG GCGGCGGCGG CGCTGTGGCT GGCGGTGGTG 60
GCGCTCGTCG TGGTGCCGGC GGTGGCGCTG CTGGTGCGGG CCCGCTGGCG CCGGGCCGCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001394--Peptidase_C19_UCH
IPR018200--USP_CS
IPR028889--USP_dom
IPR002893--Znf_MYND

PROSITE

PS00972--USP_1
PS50235--USP_3
PS01360--ZF_MYND_1
PS50865--ZF_MYND_2

Pfam

PF00443--UCH
PF01753--zf-MYND

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0046872--F:metal ion binding
GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0016579--P:protein deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

sbi:SORBI_07g023330

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000401	Aegilops tauschii	65.40	0.00e+00	1036.00
IUUC-Atr-002920	Amborella trichopoda	57.39	1.00e-137	483.00
IUUC-Aly-006266	Arabidopsis lyrata	58.53	3.00e-126	444.00
IUUC-Ath-006972	Arabidopsis thaliana	59.89	7.00e-125	441.00
IUUC-Bdi-014317	Brachypodium distachyon	67.76	0.00e+00	1115.00
IUUC-Bol-015264	Brassica oleracea	59.02	6.00e-125	441.00
IUUC-Bra-018079	Brassica rapa	58.27	9.00e-123	434.00
IUUC-Gma-043931	Glycine max	66.06	2.00e-129	456.00
IUUC-Lpe-051561	Leersia perrieri	59.92	0.00e+00	1001.00
IUUC-Mtr-058024	Medicago truncatula	40.55	4.00e-136	478.00
IUUC-Mac-064908	Musa acuminata	54.10	2.00e-167	582.00
IUUC-Oba-075163	Oryza barthii	61.49	0.00e+00	988.00
IUUC-Obr-076143	Oryza brachyantha	64.26	0.00e+00	1001.00
IUUC-Ogl-077565	Oryza glaberrima	61.49	0.00e+00	987.00
IUUC-Ogu-078443	Oryza glumaepatula	61.18	0.00e+00	974.00
IUUC-Oin-079174	Oryza indica	60.44	0.00e+00	958.00
IUUC-Olo-080489	Oryza longistaminata	63.11	0.00e+00	628.00
IUUC-Ome-081510	Oryza meridionalis	49.78	0.00e+00	710.00
IUUC-Oni-082570	Oryza nivara	61.39	0.00e+00	985.00
IUUC-Opu-084076	Oryza punctata	62.03	0.00e+00	1031.00
IUUC-Oru-084237	Oryza rufipogon	61.28	0.00e+00	982.00
IUUC-Osa-085297	Oryza sativa	61.28	0.00e+00	982.00
IUUC-Olu-087767	Ostreococcus lucimarinus	37.70	5.00e-58	216.00
IUUC-Pop-098941	Populus trichocarpa	65.12	7.00e-141	494.00
IUUC-Ppe-101893	Prunus persica	64.22	3.00e-130	458.00
IUUC-Sit-110237	Setaria italica	81.16	0.00e+00	1362.00
IUUC-Sly-111806	Solanum lycopersicum	61.76	4.00e-128	451.00
IUUC-Tca-121704	Theobroma cacao	46.14	1.00e-153	536.00
IUUC-Tae-125220	Triticum aestivum	64.38	0.00e+00	1057.00
IUUC-Tur-126736	Triticum urartu	64.37	0.00e+00	1009.00
IUUC-Vvi-130946	Vitis vinifera	51.82	4.00e-146	511.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence