iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099761

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Transducin family protein

Genbank Nucleotide ID

CM000349

Gene Name

POPTRDRAFT_287651; POPTR_0013s12120g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0013s12120	POPTR_0013s12120.1	POPTR_0013s12120.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.80e-47	158.3	314	351
UBD/Beta-Prp	2.60e-69	234.8	49	228

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sdtllvsGsdDgtikvWDlrtgvllk 37
           H+d+vtcla+   s +++++G+ Dg++++WD  +g++++
   Q: 314  HKDGVTCLAWlgaS-RYVATGCVDGKVRLWDSLSGDCIR 351
           9*********9855.9***************99999976 PP

UBD/Beta-Prp

   S: 83   tgkcvhtlkghedsvlslsfspsg.dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkll 172
           t + +h+++gh++++++++ sp +   +++G+ d+   +w++  g +    l+gh+++v+++++++dg+ll+sG+ D++v++Wd ++g+l 
   Q: 49   TDDSMHIFTGHTSELYTVACSPADpLLVATGGGDDKGFLWKIGLGDWAA-ELKGHKESVSSLTFSSDGQLLASGGFDGIVQIWDASSGNLK 138
           77899*****************77467779******************9.***************************************** PP
   S: 173  rtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlh 263
             l+g  ++ ++++ ++++g  +++gs+d+tv +w+  +g  ++++ gh++ v++ +f+p+++ + +gs+D s+riW+ +sg++++++ +h
   Q: 139  CVLEG-PDEGIEWVRWHPKGHLVLAGSEDKTVWMWNADKGAYLNSFAGHEASVTCGDFTPDGKTICTGSDDASLRIWNPKSGENIHVVRGH 228
           ****9.*******************************************************************************999876 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MNGPNRSFND DDDEDDQGEV FLDDSDIIHE VTVDEEDLPD ADDDDNDDTD DSMHIFTGHT 60
SELYTVACSP ADPLLVATGG GDDKGFLWKI GLGDWAAELK GHKESVSSLT FSSDGQLLAS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAGGGAAAAA AAAACAGAAA CACATGATTG CTGTAGCTGC ACGCGCCATT TCAATGAGCA 60
ACTGCAGTTA CAGATACAAG AGCAAAACCC TAGCTAAAAC CTCTCATTCT TCTCCTCTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR011047--Quinoprotein_ADH-like_supfam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030687--C:preribosome, large subunit precursor
GO:0051082--F:unfolded protein binding
GO:0042273--P:ribosomal large subunit biogenesis

KEGG

pop:POPTR_0013s12120g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000794	Aegilops tauschii	58.18	4.00e-117	414.00
IUUC-Atr-003169	Amborella trichopoda	69.03	3.00e-146	510.00
IUUC-Aly-006277	Arabidopsis lyrata	67.44	2.00e-135	475.00
IUUC-Bdi-014831	Brachypodium distachyon	60.59	1.00e-124	439.00
IUUC-Bol-015389	Brassica oleracea	70.08	2.00e-148	518.00
IUUC-Bra-017115	Brassica rapa	66.93	8.00e-134	469.00
IUUC-Cel-018305	Caenorhabditis elegans	25.60	2.00e-29	123.00
IUUC-Cre-022781	Chlamydomonas reinhardtii	45.38	7.00e-77	280.00
IUUC-Gma-044168	Glycine max	69.66	6.00e-147	513.00
IUUC-Hvu-047217	Hordeum vulgare	57.33	6.00e-123	433.00
IUUC-Kpa-049147	Komagataella pastoris	28.21	1.00e-25	110.00
IUUC-Lpe-050986	Leersia perrieri	59.27	8.00e-122	429.00
IUUC-Mac-065236	Musa acuminata	71.52	2.00e-147	514.00
IUUC-Oba-075195	Oryza barthii	60.55	1.00e-121	428.00
IUUC-Obr-076059	Oryza brachyantha	59.88	9.00e-126	442.00
IUUC-Ogl-077318	Oryza glaberrima	59.88	4.00e-125	440.00
IUUC-Ogu-078579	Oryza glumaepatula	60.79	4.00e-123	434.00
IUUC-Oin-079340	Oryza indica	59.88	4.00e-125	440.00
IUUC-Olo-080813	Oryza longistaminata	60.49	4.00e-122	430.00
IUUC-Ome-081420	Oryza meridionalis	61.47	3.00e-122	431.00
IUUC-Oni-082650	Oryza nivara	60.55	1.00e-121	428.00
IUUC-Opu-083832	Oryza punctata	60.24	3.00e-121	427.00
IUUC-Oru-084207	Oryza rufipogon	60.55	1.00e-121	428.00
IUUC-Osa-085708	Oryza sativa	59.88	4.00e-125	440.00
IUUC-Olu-087824	Ostreococcus lucimarinus	44.88	2.00e-67	248.00
IUUC-Pgr-103362	Puccinia graminis	31.91	4.00e-51	194.00
IUUC-Ptt-103756	Puccinia triticina	35.29	5.00e-37	147.00
IUUC-Sit-109978	Setaria italica	63.72	8.00e-133	466.00
IUUC-Sbi-114189	Sorghum bicolor	63.72	6.00e-127	446.00
IUUC-Sre-115029	Sporisorium reilianum	35.71	2.00e-52	199.00
IUUC-Tae-125689	Triticum aestivum	59.12	4.00e-122	431.00
IUUC-Tur-126174	Triticum urartu	58.18	5.00e-119	420.00
IUUC-Uma-129624	Ustilago maydis	35.09	2.00e-51	196.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence