iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-017789

Ensembl Protein ID

Bra019924.1-P

UniProt Accession

M4DTT1; M4DTT1_BRARP

Protein Name

RING-type E3 ubiquitin transferase

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra019924	Bra019924.1	Bra019924.1-P

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	5.00e-26	91.6	288	357

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 4    eeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceens 73
           e++lCpIsle+M+dPvv+++G+tydrssI kw+ sg+ tcP+t++ lt+++lv n ++ ++iq++c +n+
   Q: 288  EDLLCPISLEIMTDPVVIETGHTYDRSSITKWFGSGNITCPKTGKILTSTELVNNVSVSHVIQKHCRANG 357
           789****************************************************************997 PP

Organism

Brassica rapa

Protein Sequence
(Fasta)

MIHSKTGFSR RILTFPAVQP CKSISVTTLL DSLIQLAGDI LTFKQKHFST NKRSFQKTIR 60
QIQNLAIVLE EIRIRVGSPR RYFPGVSSLS EIHVIFQKLK FLLEDCTRDG ARVCMLMSSD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGATCCACT CTAAAACCGG GTTTAGTCGC CGGATCCTGA CATTCCCAGC TGTGCAACCA 60
TGCAAATCAA TCTCCGTAAC CACGCTACTC GACTCGCTGA TCCAACTCGC CGGCGACATC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity
GO:0010029--P:regulation of seed germination

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000617	Aegilops tauschii	35.31	2.00e-72	266.00
IUUC-Aly-006201	Arabidopsis lyrata	77.18	0.00e+00	1044.00
IUUC-Ath-006754	Arabidopsis thaliana	77.60	0.00e+00	1009.00
IUUC-Bdi-014095	Brachypodium distachyon	35.05	6.00e-87	315.00
IUUC-Bol-015964	Brassica oleracea	93.83	0.00e+00	1252.00
IUUC-Gma-043325	Glycine max	43.89	3.00e-129	455.00
IUUC-Hvu-047204	Hordeum vulgare	36.44	4.00e-102	365.00
IUUC-Lpe-051010	Leersia perrieri	35.33	6.00e-68	251.00
IUUC-Mtr-058256	Medicago truncatula	44.81	6.00e-135	474.00
IUUC-Mac-064527	Musa acuminata	39.25	1.00e-54	207.00
IUUC-Obr-076695	Oryza brachyantha	32.78	2.00e-54	206.00
IUUC-Ogl-077133	Oryza glaberrima	40.92	6.00e-78	285.00
IUUC-Ogu-078633	Oryza glumaepatula	40.25	9.00e-76	277.00
IUUC-Oin-079248	Oryza indica	40.04	4.00e-75	275.00
IUUC-Ome-081678	Oryza meridionalis	38.22	3.00e-75	276.00
IUUC-Oni-082545	Oryza nivara	38.89	7.00e-76	278.00
IUUC-Opu-083981	Oryza punctata	36.66	1.00e-88	320.00
IUUC-Oru-084317	Oryza rufipogon	39.26	1.00e-75	277.00
IUUC-Osa-085294	Oryza sativa	38.70	3.00e-75	276.00
IUUC-Pop-099290	Populus trichocarpa	42.08	6.00e-140	491.00
IUUC-Ppe-102097	Prunus persica	42.51	1.00e-132	466.00
IUUC-Sit-110113	Setaria italica	36.95	7.00e-100	357.00
IUUC-Sly-111130	Solanum lycopersicum	42.63	6.00e-150	524.00
IUUC-Stu-112861	Solanum tuberosum	39.48	2.00e-135	475.00
IUUC-Sbi-114188	Sorghum bicolor	35.81	6.00e-91	328.00
IUUC-Tca-120990	Theobroma cacao	51.15	0.00e+00	629.00
IUUC-Tae-125849	Triticum aestivum	36.30	3.00e-107	382.00
IUUC-Tur-126514	Triticum urartu	33.89	2.00e-77	283.00
IUUC-Vvi-131344	Vitis vinifera	44.32	4.00e-146	511.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence