iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099576

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000339

Gene Name

POPTRDRAFT_799854; POPTR_0003s10880g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0003s10880	POPTR_0003s10880.1	POPTR_0003s10880.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	2.30e-06	29.1	335	377
UBD/Alpha-Helix/CUE	5.80e-08	33.7	543	580

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           CaiC+e++ +  + l C H+fh+ Cl  w  l +  +   +CP+Cr
   Q: 335  CAICREPMAK-AKRLLCSHLFHLACLRSW--LDQGLNEIYSCPTCR 377
           ********99.77788*************..7777888899****8 PP

UBD/Alpha-Helix/CUE

   S: 3    etaleqLkeiFPnldysviqvvLeantgsleaavnnLLe 41
             ++e+++e++P++++++i ++L ++t+s + +vnnLL 
   Q: 543  LAMAETVREVLPHVPDELILQDL-QRTNSATVTVNNLLH 580
           579********************.*************96 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MGASYLAISA VCTVLSFSVL TEVSLHILRS DGLIVENLTN FENANHALEL LFGSYATIAL 60
VVNFVFNVFI LLNLCLKTIF FGELYPSETQ KLVERLINYA IYKGTLLPLV IPPTISQIGL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCAGGCCATT TTATTATTTA TTATTATTCT CTCTGCCACC GACGCCAACA CCAACAGTTT 60
CTTCTCCTTC TCTGATCGAG TCGAATCAAA TCAGGTTCTT TTTTTATATT TCCCTAACCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR003892--CUE
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51140--CUE
PS50089--ZF_RING_2

Pfam

PF02845--CUE
PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0000209--P:protein polyubiquitination
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0003s10880g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000658	Aegilops tauschii	41.95	4.00e-28	117.00
IUUC-Aml-001300	Ailuropoda melanoleuca	26.82	8.00e-33	134.00
IUUC-Atr-003008	Amborella trichopoda	54.90	1.00e-175	609.00
IUUC-Apl-003404	Anas platyrhynchos	26.69	9.00e-33	134.00
IUUC-Ath-006950	Arabidopsis thaliana	69.69	0.00e+00	815.00
IUUC-Bta-012980	Bos taurus	26.51	9.00e-35	141.00
IUUC-Bol-015123	Brassica oleracea	69.62	0.00e+00	801.00
IUUC-Cja-019577	Callithrix jacchus	26.97	1.00e-33	137.00
IUUC-Cfa-020793	Canis familiaris	26.12	7.00e-32	131.00
IUUC-Cpo-022387	Cavia porcellus	26.01	1.00e-33	137.00
IUUC-Csa-023168	Chlorocebus sabaeus	26.97	1.00e-33	137.00
IUUC-Dno-029407	Dasypus novemcinctus	27.25	2.00e-32	133.00
IUUC-Dor-030961	Dipodomys ordii	26.97	7.00e-33	134.00
IUUC-Ete-032962	Echinops telfairi	26.97	6.00e-30	125.00
IUUC-Fca-035398	Felis catus	27.09	1.00e-33	137.00
IUUC-Fal-036758	Ficedula albicollis	25.93	4.00e-36	145.00
IUUC-Gmo-039014	Gadus morhua	26.51	3.00e-29	122.00
IUUC-Gac-041414	Gasterosteus aculeatus	29.09	5.00e-30	125.00
IUUC-Hsa-046272	Homo sapiens	26.97	1.00e-33	137.00
IUUC-Itr-047956	Ictidomys tridecemlineatus	27.09	3.00e-34	139.00
IUUC-Laf-053452	Loxodonta africana	26.82	2.00e-33	137.00
IUUC-Mcc-055820	Macaca mulatta	26.88	1.00e-32	134.00
IUUC-Mga-059937	Meleagris gallopavo	26.59	2.00e-34	140.00
IUUC-Mmr-060730	Microcebus murinus	27.25	1.00e-33	137.00
IUUC-Mmu-064219	Mus musculus	27.53	3.00e-34	139.00
IUUC-Mpu-066796	Mustela putorius furo	26.76	2.00e-31	129.00
IUUC-Mlu-068189	Myotis lucifugus	27.25	4.00e-32	132.00
IUUC-Nle-069239	Nomascus leucogenys	26.97	2.00e-33	137.00
IUUC-Ont-072033	Oreochromis niloticus	27.98	1.00e-31	130.00
IUUC-Ocu-074145	Oryctolagus cuniculus	26.97	7.00e-33	135.00
IUUC-Oba-074987	Oryza barthii	42.16	3.00e-92	331.00
IUUC-Ogu-078481	Oryza glumaepatula	40.71	8.00e-95	340.00
IUUC-Oin-079556	Oryza indica	48.81	9.00e-130	456.00
IUUC-Ome-081941	Oryza meridionalis	44.80	1.00e-106	379.00
IUUC-Oni-082488	Oryza nivara	40.48	9.00e-93	333.00
IUUC-Opu-083500	Oryza punctata	48.30	7.00e-108	384.00
IUUC-Oru-085082	Oryza rufipogon	42.16	3.00e-92	331.00
IUUC-Osa-085509	Oryza sativa	52.93	8.00e-137	480.00
IUUC-Ola-087152	Oryzias latipes	28.02	4.00e-30	125.00
IUUC-Oga-088486	Otolemur garnettii	27.25	9.00e-34	137.00
IUUC-Oar-089310	Ovis aries	26.82	1.00e-33	137.00
IUUC-Ptr-090649	Pan troglodytes	26.97	2.00e-33	136.00
IUUC-Pan-091692	Papio anubis	27.25	8.00e-34	138.00
IUUC-Ppa-095969	Physcomitrella patens	45.13	2.00e-120	425.00
IUUC-Pfo-096810	Poecilia formosa	28.65	1.00e-30	127.00
IUUC-Pab-097859	Pongo abelii	26.88	2.00e-32	133.00
IUUC-Rno-105880	Rattus norvegicus	26.97	1.00e-32	134.00
IUUC-Sha-107015	Sarcophilus harrisii	25.54	2.00e-32	133.00
IUUC-Sit-110161	Setaria italica	53.33	3.00e-139	488.00
IUUC-Sly-111850	Solanum lycopersicum	64.97	0.00e+00	714.00
IUUC-Sbi-113957	Sorghum bicolor	52.74	6.00e-145	507.00
IUUC-Tru-117805	Takifugu rubripes	27.87	1.00e-31	130.00
IUUC-Tsy-119442	Tarsius syrichta	27.25	3.00e-33	136.00
IUUC-Ttr-128181	Tursiops truncatus	26.97	3.00e-33	136.00
IUUC-Xma-133943	Xiphophorus maculatus	28.36	3.00e-30	126.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence