iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Rno-105006

Ensembl Protein ID

ENSRNOP00000074615.1

UniProt Accession

Q5XIX1; Q5XIX1_RAT

Genbank Protein ID

AAH83548.1; EDL98789.1; EDL98790.1

Protein Name

Ring finger protein 38; Ring finger protein 38, isoform CRA_a; Rnf38 protein

Genbank Nucleotide ID

AABR07073108; CH473962; CH473962

Gene Name

Rnf38; rCG_54795

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000013956.7	ENSRNOT00000077367.1	ENSRNOP00000074615.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
microRNA	RAID2
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	3.60e-09	37.4	380	421

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C +C++df+    ++vlpC+H fha+C+ kw       +++ +CP+Cr
   Q: 380  CVVCMCDFESRqlLRVLPCNHEFHAKCVDKW------LKGNRTCPICR 421
           ********4434599****************......**********8 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MRPWEMTSNR QPPSVRPNQH HFSGERCNTP ARNRRSPPVR RQRGRRERLS RHNSISQDEN 60
YHHLPYAQQQ AIEEPRAFHP PNVSPRLLHP AAHPPQQNAV MVDIHDQLHQ GTVPVSYTVT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGCGCGGGGG AAAGAGGCGG AGCTCTCCGG CGATCCTGCG CTTGGCTGGC TAGGTTTGTT 60
CAGGCAAGGG GAGGGGCGGG TGTCCGGAAC TCAGATGAGG AAGTCTCTCG GGTTTTATCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0036126--C:sperm flagellum
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0008584--P:male gonad development
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0007286--P:spermatid development

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001752	Ailuropoda melanoleuca	97.69	0.00e+00	679.00
IUUC-Atr-002696	Amborella trichopoda	46.58	1.00e-15	76.30
IUUC-Apl-003246	Anas platyrhynchos	89.07	0.00e+00	667.00
IUUC-Aca-005355	Anolis carolinensis	94.91	0.00e+00	648.00
IUUC-Ame-011569	Astyanax mexicanus	61.66	8.00e-125	440.00
IUUC-Bta-012401	Bos taurus	96.76	0.00e+00	676.00
IUUC-Bdi-014369	Brachypodium distachyon	37.36	9.00e-16	77.40
IUUC-Cja-018848	Callithrix jacchus	97.00	0.00e+00	713.00
IUUC-Cfa-020501	Canis familiaris	97.69	0.00e+00	677.00
IUUC-Cpo-021722	Cavia porcellus	97.92	0.00e+00	687.00
IUUC-Csa-024088	Chlorocebus sabaeus	97.69	0.00e+00	684.00
IUUC-Cho-024540	Choloepus hoffmanni	77.31	7.00e-143	500.00
IUUC-Dre-028201	Danio rerio	74.11	4.00e-128	451.00
IUUC-Dno-029482	Dasypus novemcinctus	97.45	0.00e+00	681.00
IUUC-Dor-030261	Dipodomys ordii	85.65	0.00e+00	641.00
IUUC-Dse-031302	Dothistroma septosporum	47.73	9.00e-11	62.40
IUUC-Ete-032580	Echinops telfairi	87.96	1.00e-174	606.00
IUUC-Eca-033264	Equus caballus	97.22	0.00e+00	691.00
IUUC-Eeu-035181	Erinaceus europaeus	89.35	3.00e-178	617.00
IUUC-Fca-036484	Felis catus	97.69	0.00e+00	680.00
IUUC-Fal-037568	Ficedula albicollis	94.44	0.00e+00	687.00
IUUC-Gmo-038772	Gadus morhua	62.64	2.00e-131	462.00
IUUC-Gga-040685	Gallus gallus	93.26	0.00e+00	661.00
IUUC-Gac-041636	Gasterosteus aculeatus	62.70	7.00e-122	430.00
IUUC-Ggo-044571	Gorilla gorilla	97.69	0.00e+00	687.00
IUUC-Hsa-046118	Homo sapiens	97.69	0.00e+00	687.00
IUUC-Hvu-047245	Hordeum vulgare	44.00	8.00e-15	74.70
IUUC-Itr-048953	Ictidomys tridecemlineatus	97.92	0.00e+00	690.00
IUUC-Lch-050401	Latimeria chalumnae	91.69	0.00e+00	675.00
IUUC-Lpe-051226	Leersia perrieri	43.42	8.00e-15	75.10
IUUC-Loc-052875	Lepisosteus oculatus	85.18	5.00e-159	553.00
IUUC-Lma-052952	Leptosphaeria maculans	32.74	6.00e-11	62.80
IUUC-Laf-054381	Loxodonta africana	97.45	0.00e+00	678.00
IUUC-Mcc-055576	Macaca mulatta	97.69	0.00e+00	687.00
IUUC-Meu-056433	Macropus eugenii	89.85	3.00e-138	484.00
IUUC-Mtr-058188	Medicago truncatula	38.10	3.00e-14	72.80
IUUC-Mla-058928	Melampsora laricipopulina	40.91	9.00e-10	56.60
IUUC-Mga-059597	Meleagris gallopavo	91.18	4.00e-177	614.00
IUUC-Mmr-061247	Microcebus murinus	97.45	0.00e+00	686.00
IUUC-Mdo-061822	Monodelphis domestica	96.30	0.00e+00	704.00
IUUC-Mmu-064200	Mus musculus	98.84	0.00e+00	696.00
IUUC-Mac-065545	Musa acuminata	39.18	7.00e-16	77.40
IUUC-Mpu-066571	Mustela putorius furo	97.69	0.00e+00	679.00
IUUC-Mlu-067948	Myotis lucifugus	96.99	0.00e+00	704.00
IUUC-Nle-069466	Nomascus leucogenys	97.69	0.00e+00	688.00
IUUC-Ont-072424	Oreochromis niloticus	66.60	3.00e-129	454.00
IUUC-Oan-073236	Ornithorhynchus anatinus	82.38	6.00e-178	616.00
IUUC-Ocu-073866	Oryctolagus cuniculus	97.23	0.00e+00	729.00
IUUC-Oba-075181	Oryza barthii	42.11	3.00e-15	76.60
IUUC-Obr-076646	Oryza brachyantha	42.11	1.00e-15	77.00
IUUC-Ogl-077643	Oryza glaberrima	42.11	1.00e-15	77.00
IUUC-Ogu-078678	Oryza glumaepatula	42.11	3.00e-15	76.30
IUUC-Oin-080156	Oryza indica	42.11	1.00e-15	77.00
IUUC-Olo-080454	Oryza longistaminata	40.79	9.00e-15	74.70
IUUC-Ome-081863	Oryza meridionalis	42.67	5.00e-14	72.40
IUUC-Oni-082085	Oryza nivara	40.79	7.00e-15	74.70
IUUC-Opu-083709	Oryza punctata	42.11	2.00e-15	76.60
IUUC-Oru-084579	Oryza rufipogon	42.11	3.00e-15	76.30
IUUC-Osa-085466	Oryza sativa	42.11	1.00e-15	77.00
IUUC-Ola-086948	Oryzias latipes	64.40	1.00e-117	416.00
IUUC-Oga-087997	Otolemur garnettii	97.45	0.00e+00	687.00
IUUC-Oar-090272	Ovis aries	96.76	0.00e+00	679.00
IUUC-Ptr-091566	Pan troglodytes	97.92	0.00e+00	689.00
IUUC-Pan-091884	Papio anubis	97.69	0.00e+00	688.00
IUUC-Psi-093539	Pelodiscus sinensis	95.83	0.00e+00	701.00
IUUC-Pfo-096747	Poecilia formosa	62.73	6.00e-119	421.00
IUUC-Pab-098694	Pongo abelii	97.69	0.00e+00	684.00
IUUC-Pop-098962	Populus trichocarpa	41.49	1.00e-16	79.30
IUUC-Pca-100704	Procavia capensis	75.78	4.00e-107	381.00
IUUC-Pva-103055	Pteropus vampyrus	97.57	0.00e+00	637.00
IUUC-Sit-109831	Setaria italica	38.46	1.00e-15	77.00
IUUC-Sly-111171	Solanum lycopersicum	36.05	7.00e-13	67.40
IUUC-Stu-112327	Solanum tuberosum	46.58	6.00e-15	75.10
IUUC-Sar-112966	Sorex araneus	98.38	0.00e+00	684.00
IUUC-Sre-114942	Sporisorium reilianum	29.85	9.00e-12	65.90
IUUC-Ssc-115502	Sus scrofa	97.92	0.00e+00	681.00
IUUC-Tgu-117480	Taeniopygia guttata	90.99	0.00e+00	655.00
IUUC-Tsy-118844	Tarsius syrichta	92.36	0.00e+00	629.00
IUUC-Tni-119691	Tetraodon nigroviridis	62.08	2.00e-121	429.00
IUUC-Tca-121858	Theobroma cacao	41.11	5.00e-16	79.00
IUUC-Tae-125336	Triticum aestivum	44.44	4.00e-15	75.10
IUUC-Tur-126249	Triticum urartu	36.26	7.00e-15	73.90
IUUC-Tbe-127237	Tupaia belangeri	84.95	8.00e-172	596.00
IUUC-Ttr-129073	Tursiops truncatus	97.57	0.00e+00	636.00
IUUC-Uma-129479	Ustilago maydis	26.19	7.00e-12	66.20
IUUC-Vpa-130240	Vicugna pacos	97.54	2.00e-144	506.00
IUUC-Vvi-131462	Vitis vinifera	40.00	4.00e-17	81.60
IUUC-Xtr-131963	Xenopus tropicalis	94.44	0.00e+00	716.00
IUUC-Xma-133395	Xiphophorus maculatus	63.82	3.00e-123	436.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence