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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Rno-106007
UUCD1 version UUC-RaN-00446
Ensembl Protein ID ENSRNOP00000046880.2
UniProt Accession Q63625; PHRF1_RAT
Genbank Protein ID AAC52658.1; ENSRNOP00000023376
Protein Name PHD and RING finger domain-containing protein 1; CTD-binding SR-like protein rA9
Genbank Nucleotide ID U49057; AC118351
Gene Name Phrf1
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000017299.7 ENSRNOT00000051755.4 ENSRNOP00000046880.2
ENSRNOG00000017299.7 ENSRNOT00000023376.4 ENSRNOP00000023376.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
microRNATRANSFACRAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
CPLMdbPAFPhosphositePlusUniProt
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 activity/RING/PHD 1.20e-09 38.6 189 236
E3 activity/RING/RING 3.90e-07 30.9 109 150
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/PHD
   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           ++C vCg++++++  l+ C+ C+  +H +Cl ++  +e+p +e w+Cp+C 
   Q: 189  TFCEVCGRSDRED-RLLLCDGCDAGYHMECLDPP-LQEVPVDE-WFCPECA 236
           69*********88.5*******************.*******8.******6 PP
   

   E3 activity/RING/RING
   S: 1    CaiCledfkdgplvlp..CgHvfhadClqkwpglknssskefrCPlCr 46
           C+iCl+ f+d+ + +p  C H f++dC+  w      s+++ +CP++r
   Q: 109  CPICLNAFRDQAVGTPetCAHYFCLDCIIEW------SRNANSCPVDR 150
           ********99999999***************......********987 PP
   
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MDDDNLDELV AHSPGPDGPP QVGSSELASD AEESSNGHSE DSEDDTGSEQ DDDTDGEETE 60
GLSEEEDPED RSGSEDSEDG IEVPTAAVET QRKLEASSTP NSDDDAESCP ICLNAFRDQA 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-106007|E3,PHD;E3,RING|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CGCGCGGCGG CGGTGGCGGC GGCGGCGGCT GACCGGCCTA CTTGCGGTCG TGTTCGGACA 60
GAGGCAGGAT CGTCTAGGAG CGTCCGGGAG GCGCGAGGTT TCCGGGTACG TGCGGTAGCC 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-106007|E3,PHD;E3,RING|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0025--Alternative splicing
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger
Interpro

IPR015970--P40_nucleoprot_sub2_BD-vir
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS
PROSITE

PS01359--ZF_PHD_1
PS50016--ZF_PHD_2
PS00518--ZF_RING_1
PS50089--ZF_RING_2
Pfam

PF00628--PHD
PF13639--zf-RING_2
SMART

SM00249--PHD
SM00184--RING
Gene Ontology

GO:0016020--C:membrane
GO:0019904--F:protein domain specific binding
GO:0070063--F:RNA polymerase binding
GO:0008270--F:zinc ion binding
GO:0006397--P:mRNA processing
GO:0006366--P:transcription from RNA polymerase II promoter
KEGG rno:245925
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001707 Ailuropoda melanoleuca 62.09 0.00e+00 1294.00
IUUC-Apl-003929 Anas platyrhynchos 51.53 0.00e+00 702.00
IUUC-Aca-004929 Anolis carolinensis 56.69 0.00e+00 757.00
IUUC-Acl-008371 Aspergillus clavatus 29.66 7.00e-12 65.90
IUUC-Afl-008743 Aspergillus flavus 32.77 5.00e-12 66.20
IUUC-Afu-008965 Aspergillus fumigatus 33.05 2.00e-14 73.90
IUUC-Ani-009406 Aspergillus nidulans 31.36 1.00e-13 71.20
IUUC-Aor-009922 Aspergillus oryzae 32.77 4.00e-12 66.60
IUUC-Ate-010407 Aspergillus terreus 33.05 3.00e-12 66.60
IUUC-Ame-010920 Astyanax mexicanus 54.27 1.00e-120 428.00
IUUC-Bgr-012184 Blumeria graminis 28.91 2.00e-16 80.90
IUUC-Bci-013863 Botrytis cinerea 32.47 9.00e-17 82.00
IUUC-Bdi-014588 Brachypodium distachyon 27.97 1.00e-11 65.90
IUUC-Cja-019443 Callithrix jacchus 68.67 0.00e+00 984.00
IUUC-Cfa-021078 Canis familiaris 62.26 3.00e-164 573.00
IUUC-Cpo-022518 Cavia porcellus 67.76 0.00e+00 993.00
IUUC-Cre-022637 Chlamydomonas reinhardtii 57.69 8.00e-09 51.20
IUUC-Csa-024020 Chlorocebus sabaeus 70.52 0.00e+00 1071.00
IUUC-Cho-024396 Choloepus hoffmanni 35.21 6.00e-13 70.50
IUUC-Cin-025408 Ciona intestinalis 43.38 1.00e-44 174.00
IUUC-Csv-026207 Ciona savignyi 41.71 2.00e-37 148.00
IUUC-Cgl-026545 Colletotrichum gloeosporioides 35.94 1.00e-16 81.60
IUUC-Dre-028443 Danio rerio 55.27 8.00e-68 253.00
IUUC-Dno-029298 Dasypus novemcinctus 58.64 0.00e+00 807.00
IUUC-Dme-031664 Drosophila melanogaster 39.63 7.00e-37 150.00
IUUC-Eca-033870 Equus caballus 68.85 0.00e+00 966.00
IUUC-Fca-036396 Felis catus 69.20 0.00e+00 1014.00
IUUC-Fal-037446 Ficedula albicollis 57.56 0.00e+00 728.00
IUUC-Fox-037887 Fusarium oxysporum 28.91 4.00e-15 76.60
IUUC-Fso-038253 Fusarium solani 29.13 2.00e-14 73.90
IUUC-Gmo-039170 Gadus morhua 53.22 8.00e-68 252.00
IUUC-Ggr-039838 Gaeumannomyces graminis 34.65 3.00e-17 83.60
IUUC-Gga-040178 Gallus gallus 57.56 0.00e+00 758.00
IUUC-Gac-042138 Gasterosteus aculeatus 53.39 3.00e-113 404.00
IUUC-Ggo-045239 Gorilla gorilla 70.22 0.00e+00 1046.00
IUUC-Hsa-047032 Homo sapiens 71.37 0.00e+00 1000.00
IUUC-Hvu-047154 Hordeum vulgare 29.65 3.00e-13 70.90
IUUC-Itr-048665 Ictidomys tridecemlineatus 74.28 0.00e+00 1143.00
IUUC-Kpa-049155 Komagataella pastoris 29.85 6.00e-09 55.50
IUUC-Lch-049602 Latimeria chalumnae 62.95 7.00e-144 505.00
IUUC-Loc-052887 Lepisosteus oculatus 62.27 3.00e-130 460.00
IUUC-Laf-054317 Loxodonta africana 71.03 7.00e-179 620.00
IUUC-Mcc-055760 Macaca mulatta 71.69 0.00e+00 1043.00
IUUC-Meu-056741 Macropus eugenii 69.16 6.00e-155 542.00
IUUC-Mor-056964 Magnaporthe oryzae 34.13 7.00e-18 85.50
IUUC-Mga-059236 Meleagris gallopavo 57.48 0.00e+00 751.00
IUUC-Mmr-060938 Microcebus murinus 69.90 0.00e+00 1059.00
IUUC-Mdo-061937 Monodelphis domestica 57.84 0.00e+00 874.00
IUUC-Mmu-063932 Mus musculus 91.17 0.00e+00 1426.00
IUUC-Mpu-066615 Mustela putorius furo 67.24 0.00e+00 888.00
IUUC-Mlu-067670 Myotis lucifugus 63.21 0.00e+00 866.00
IUUC-Nfi-068246 Neosartorya fischeri 33.05 1.00e-13 72.00
IUUC-Ncr-068647 Neurospora crassa 34.92 2.00e-18 87.40
IUUC-Nle-069562 Nomascus leucogenys 70.02 0.00e+00 1021.00
IUUC-Ont-072073 Oreochromis niloticus 42.45 2.00e-126 447.00
IUUC-Ocu-073818 Oryctolagus cuniculus 68.04 0.00e+00 880.00
IUUC-Obr-076166 Oryza brachyantha 27.92 1.00e-12 68.60
IUUC-Oin-079478 Oryza indica 28.10 9.00e-12 64.70
IUUC-Ome-081535 Oryza meridionalis 27.70 2.00e-12 68.90
IUUC-Oar-090046 Ovis aries 57.14 0.00e+00 765.00
IUUC-Ptr-091344 Pan troglodytes 68.82 0.00e+00 1039.00
IUUC-Pan-091953 Papio anubis 67.21 0.00e+00 939.00
IUUC-Psi-093027 Pelodiscus sinensis 54.39 0.00e+00 724.00
IUUC-Pma-094431 Petromyzon marinus 51.90 9.00e-61 227.00
IUUC-Pfo-096523 Poecilia formosa 52.69 1.00e-118 421.00
IUUC-Pca-100725 Procavia capensis 67.47 1.00e-166 581.00
IUUC-Pva-102835 Pteropus vampyrus 60.70 0.00e+00 811.00
IUUC-Sja-107848 Schizosaccharomyces japonicus 33.33 2.00e-20 93.60
IUUC-Spo-108141 Schizosaccharomyces pombe 39.66 2.00e-18 87.40
IUUC-Sit-110177 Setaria italica 29.93 1.00e-12 68.60
IUUC-Ssc-115487 Sus scrofa 61.26 0.00e+00 862.00
IUUC-Tgu-116964 Taeniopygia guttata 57.07 3.00e-180 626.00
IUUC-Tru-117543 Takifugu rubripes 52.00 7.00e-117 416.00
IUUC-Tni-119922 Tetraodon nigroviridis 52.93 1.00e-111 398.00
IUUC-Tre-121933 Trichoderma reesei 28.93 3.00e-16 80.10
IUUC-Tvi-122509 Trichoderma virens 30.16 4.00e-15 76.30
IUUC-Tae-123262 Triticum aestivum 31.29 9.00e-14 72.40
IUUC-Tur-126349 Triticum urartu 32.03 5.00e-14 73.60
IUUC-Ttr-129201 Tursiops truncatus 59.22 2.00e-143 504.00
IUUC-Vda-129876 Verticillium dahliae 33.07 5.00e-16 79.70
IUUC-Xtr-131759 Xenopus tropicalis 43.99 2.00e-146 514.00
IUUC-Xma-133123 Xiphophorus maculatus 52.32 3.00e-109 390.00
Created Date 25-Jun-2017

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