iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Ssc-115965

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CU464073

Gene Name

CBX4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSSCG00000017160.2	ENSSSCT00000018684.2	ENSSSCP00000018183.2

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/Other	90.36	0.00e+00	832.00	IUUC-Hsa-046374
E3 activity/Other	89.49	0.00e+00	822.00	IUUC-Mmu-063344

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Sus scrofa

Protein Sequence
(Fasta)

MELPAVGEHV FAVESIEKKR IRKGRVEYLV KWRGWSPKYN TWEPEENILD PRLLIAFQNR 60
ERQEQLMGYR KRGPKPKPLV VQVPTFARRS NVLTGLQDSS ADNRAKLELG SQGKGQGHQY 120

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Nucleotide Sequence
(Fasta)

GAGGCCCCGC CCGCTGACGT CCGGATTTGC ATGAGTTCTT GTGCAGCCGC GGCCCGGGCT 60
CAGTTGTCTG AGCGAGTGCG AGCCGGGAGC GGGGCAGGCG CGGGCAGCGG CGGGCGGCCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome

Interpro

IPR033773--CBX7_C
IPR000953--Chromo/chromo_shadow_dom
IPR017984--Chromo_dom_subgr
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR023779--Chromodomain_CS

PROSITE

PS00598--CHROMO_1
PS50013--CHROMO_2

Pfam

PF17218--CBX7_C
PF00385--Chromo

PRINTS

PR00504--CHROMODOMAIN

SMART

SM00298--CHROMO

Gene Ontology

GO:0016604--C:nuclear body
GO:0035102--C:PRC1 complex
GO:0003682--F:chromatin binding
GO:0003727--F:single-stranded RNA binding
GO:0044212--F:transcription regulatory region DNA binding
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0016925--P:protein sumoylation

KEGG

ssc:100511584

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001747	Ailuropoda melanoleuca	89.27	0.00e+00	735.00
IUUC-Atr-003112	Amborella trichopoda	52.94	4.00e-11	62.00
IUUC-Apl-003876	Anas platyrhynchos	64.75	3.00e-75	274.00
IUUC-Aca-004445	Anolis carolinensis	49.91	2.00e-111	396.00
IUUC-Aly-006366	Arabidopsis lyrata	53.33	1.00e-11	64.30
IUUC-Ath-006608	Arabidopsis thaliana	53.33	1.00e-11	63.90
IUUC-Ame-010980	Astyanax mexicanus	44.46	3.00e-100	358.00
IUUC-Bta-013216	Bos taurus	76.61	0.00e+00	655.00
IUUC-Bdi-014604	Brachypodium distachyon	39.74	2.00e-12	66.60
IUUC-Bol-015449	Brassica oleracea	55.56	3.00e-12	66.20
IUUC-Bra-017229	Brassica rapa	55.56	2.00e-12	67.00
IUUC-Cja-018821	Callithrix jacchus	88.72	0.00e+00	811.00
IUUC-Cfa-020457	Canis familiaris	91.17	0.00e+00	678.00
IUUC-Cpo-021550	Cavia porcellus	84.90	0.00e+00	797.00
IUUC-Csa-024090	Chlorocebus sabaeus	90.71	0.00e+00	838.00
IUUC-Dre-027769	Danio rerio	42.26	9.00e-78	283.00
IUUC-Dno-028987	Dasypus novemcinctus	89.11	5.00e-129	453.00
IUUC-Eca-033419	Equus caballus	88.73	3.00e-108	384.00
IUUC-Fca-035513	Felis catus	91.70	0.00e+00	783.00
IUUC-Gmo-038639	Gadus morhua	41.72	3.00e-87	315.00
IUUC-Gga-040221	Gallus gallus	63.11	1.00e-162	566.00
IUUC-Gac-042105	Gasterosteus aculeatus	43.28	2.00e-94	339.00
IUUC-Ggo-044433	Gorilla gorilla	84.91	0.00e+00	728.00
IUUC-Hsa-046374	Homo sapiens	90.71	0.00e+00	799.00
IUUC-Hvu-047395	Hordeum vulgare	42.86	4.00e-09	55.50
IUUC-Itr-048523	Ictidomys tridecemlineatus	91.17	0.00e+00	861.00
IUUC-Lch-050606	Latimeria chalumnae	50.62	4.00e-135	474.00
IUUC-Loc-052513	Lepisosteus oculatus	74.60	4.00e-71	260.00
IUUC-Laf-053583	Loxodonta africana	75.00	4.00e-108	383.00
IUUC-Mcc-055070	Macaca mulatta	89.88	0.00e+00	700.00
IUUC-Meu-055954	Macropus eugenii	78.46	3.00e-124	437.00
IUUC-Mga-059417	Meleagris gallopavo	55.17	2.00e-112	398.00
IUUC-Mmr-060774	Microcebus murinus	91.91	0.00e+00	829.00
IUUC-Mdo-062825	Monodelphis domestica	76.72	0.00e+00	702.00
IUUC-Mmu-063344	Mus musculus	88.41	0.00e+00	827.00
IUUC-Mpu-066193	Mustela putorius furo	92.82	0.00e+00	756.00
IUUC-Mlu-067939	Myotis lucifugus	88.29	0.00e+00	745.00
IUUC-Nle-069889	Nomascus leucogenys	95.71	2.00e-35	142.00
IUUC-Ont-071531	Oreochromis niloticus	42.78	2.00e-94	339.00
IUUC-Ocu-074528	Oryctolagus cuniculus	79.47	3.00e-139	488.00
IUUC-Oba-075909	Oryza barthii	37.93	6.00e-12	64.70
IUUC-Obr-076678	Oryza brachyantha	36.59	2.00e-11	63.20
IUUC-Ogl-077833	Oryza glaberrima	37.93	9.00e-12	64.30
IUUC-Ogu-078599	Oryza glumaepatula	37.93	8.00e-12	64.70
IUUC-Oni-082564	Oryza nivara	37.93	7.00e-12	64.70
IUUC-Opu-083875	Oryza punctata	37.93	8.00e-12	64.70
IUUC-Oru-084465	Oryza rufipogon	37.93	7.00e-12	64.70
IUUC-Osa-085995	Oryza sativa	37.93	9.00e-12	64.30
IUUC-Ola-086942	Oryzias latipes	45.17	3.00e-97	348.00
IUUC-Oga-088509	Otolemur garnettii	92.91	0.00e+00	889.00
IUUC-Oar-089503	Ovis aries	94.15	0.00e+00	788.00
IUUC-Ptr-091416	Pan troglodytes	90.71	0.00e+00	799.00
IUUC-Pan-092459	Papio anubis	91.09	0.00e+00	839.00
IUUC-Psi-093173	Pelodiscus sinensis	56.77	2.00e-113	402.00
IUUC-Pfo-096252	Poecilia formosa	42.53	1.00e-97	350.00
IUUC-Pab-097991	Pongo abelii	90.08	0.00e+00	664.00
IUUC-Pca-100744	Procavia capensis	83.15	0.00e+00	765.00
IUUC-Pte-104285	Pyrenophora teres	45.71	3.00e-03	35.00
IUUC-Rno-105878	Rattus norvegicus	96.63	3.00e-110	391.00
IUUC-Sha-107505	Sarcophilus harrisii	75.90	6.00e-161	560.00
IUUC-Spo-108161	Schizosaccharomyces pombe	27.54	7.00e-04	39.70
IUUC-Sit-110439	Setaria italica	53.33	1.00e-11	63.50
IUUC-Sly-111669	Solanum lycopersicum	44.64	5.00e-12	65.50
IUUC-Stu-112251	Solanum tuberosum	39.44	2.00e-12	67.00
IUUC-Tgu-117367	Taeniopygia guttata	53.79	2.00e-130	458.00
IUUC-Tru-118234	Takifugu rubripes	41.87	8.00e-88	317.00
IUUC-Tni-120129	Tetraodon nigroviridis	41.39	4.00e-77	281.00
IUUC-Tae-124603	Triticum aestivum	44.29	2.00e-09	56.20
IUUC-Ttr-128982	Tursiops truncatus	91.21	0.00e+00	756.00
IUUC-Vvi-131282	Vitis vinifera	46.81	5.00e-11	62.00
IUUC-Xtr-132586	Xenopus tropicalis	57.45	2.00e-102	365.00
IUUC-Xma-133102	Xiphophorus maculatus	42.88	2.00e-92	332.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence