iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114243

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000763

Gene Name

SORBI_004G169200

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb04g022070	Sb04g022070.1	Sb04g022070.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	5.10e-34	117.0	11	87

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 1    evpeeflCpIslelMrdPvvlpsGitydrssIekwl.asggktcPvtrqpl..teedlvPnltlrrliqawceenss 74
           evp++flCpIsle+MrdPv+l++Gitydr+sIe+wl a+g+ tcPvtr+ l  +e d +Pn+tlrrliqawc+++++
   Q: 11   EVPHYFLCPISLEVMRDPVTLATGITYDRASIERWLfADGHATCPVTRRALapAEMDATPNHTLRRLIQAWCAAHQV 87
           69**********************************777777*********7667777****************997 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MEVSSSSAAA EVPHYFLCPI SLEVMRDPVT LATGITYDRA SIERWLFADG HATCPVTRRA 60
LAPAEMDATP NHTLRRLIQA WCAAHQVERF PTPRPPLDSC RVAALLDEGR HGGDRQAAAA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAGGTCT CGTCGTCTTC GGCGGCGGCG GAGGTCCCCC ATTACTTCCT CTGCCCGATC 60
TCGCTGGAGG TGATGCGCGA CCCGGTCACG CTCGCCACCG GCATCACCTA CGACCGCGCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

sbi:SORBI_04g022070

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000639	Aegilops tauschii	71.19	1.00e-148	518.00
IUUC-Atr-002430	Amborella trichopoda	43.80	8.00e-87	313.00
IUUC-Aly-006194	Arabidopsis lyrata	45.19	6.00e-95	340.00
IUUC-Ath-007471	Arabidopsis thaliana	46.15	6.00e-95	340.00
IUUC-Gma-043412	Glycine max	47.72	7.00e-108	382.00
IUUC-Mtr-058052	Medicago truncatula	47.02	3.00e-109	387.00
IUUC-Mac-064692	Musa acuminata	46.75	5.00e-96	343.00
IUUC-Ogl-077357	Oryza glaberrima	60.87	1.00e-123	435.00
IUUC-Pop-099941	Populus trichocarpa	49.88	2.00e-113	401.00
IUUC-Ppe-102059	Prunus persica	46.36	2.00e-108	384.00
IUUC-Sly-111579	Solanum lycopersicum	47.09	3.00e-99	354.00
IUUC-Stu-112238	Solanum tuberosum	46.60	5.00e-110	390.00
IUUC-Tca-121107	Theobroma cacao	46.97	9.00e-107	379.00
IUUC-Tae-124641	Triticum aestivum	72.01	4.00e-148	516.00
IUUC-Tur-125965	Triticum urartu	67.06	7.00e-142	496.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence