iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006933

UUCD1 version

UUC-ArT-01528

Ensembl Protein ID

AT3G19380.1

UniProt Accession

Q9LT79; Q0WMA7; PUB25_ARATH

Genbank Protein ID

BAB02462.1; AEE76233.1; ABG25071.1; AAM63504.1; BAF01749.1

Protein Name

U-box domain-containing protein 25; Plant U-box protein 25; RING-type E3 ubiquitin transferase PUB25

Genbank Nucleotide ID

AB025624; CP002686; BT025982; AY086503; AK229923

Gene Name

PUB25; At3g19380; MLD14.11

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G19380	AT3G19380.1	AT3G19380.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/U-box	U-box	18664614

Classification

Family	E-value	Score	Start	End
E3 activity/RING/U-box	5.00e-34	117.1	13	87

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 1    evpeeflCpIslelMrdPvvlpsGitydrssIekwlasggk.tcPvtrqplteedlvPnltlrrliqawceenss 74
           ++p +f+CpIslelM+dPv++++G+tydr+sIe w++ g++ tcPvtr+pl++ +l+Pn+tlrrliq+wc +n+s
   Q: 13   QIPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNtTCPVTRAPLSDFTLIPNHTLRRLIQEWCVANRS 87
           5899********************************988888*****************************9986 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase.

Protein Sequence
(Fasta)

MPRNIEPLDL GIQIPYHFRC PISLELMQDP VTVCTGQTYD RASIESWVSI GNNTTCPVTR 60
APLSDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQPA DPTSVRALLS QASAITGTHV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAAATTATC ATAAAGAGAT GTATAATTGT ATATCATTCA TATAAATCTT AAGCTTCACT 60
TCAAAGATGC GACTTTCTCC CACAAAACAT ATTTACGTAT ATATCATCTC ATGATGTTCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity
GO:0010200--P:response to chitin

KEGG

ath:AT3G19380

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002952	Amborella trichopoda	55.37	9.00e-99	353.00
IUUC-Aly-006085	Arabidopsis lyrata	97.48	0.00e+00	651.00
IUUC-Bdi-014994	Brachypodium distachyon	45.83	7.00e-62	230.00
IUUC-Bol-015539	Brassica oleracea	85.61	9.00e-173	598.00
IUUC-Bra-017123	Brassica rapa	85.61	9.00e-172	595.00
IUUC-Hvu-047378	Hordeum vulgare	44.94	4.00e-70	258.00
IUUC-Oba-075168	Oryza barthii	57.83	1.00e-45	174.00
IUUC-Obr-076528	Oryza brachyantha	82.83	3.00e-45	175.00
IUUC-Oin-079962	Oryza indica	61.84	5.00e-46	181.00
IUUC-Ppe-101571	Prunus persica	64.07	2.00e-138	484.00
IUUC-Sit-110186	Setaria italica	63.16	6.00e-48	184.00
IUUC-Sly-111810	Solanum lycopersicum	66.67	3.00e-141	494.00
IUUC-Stu-112274	Solanum tuberosum	67.61	1.00e-142	499.00
IUUC-Tur-126112	Triticum urartu	45.50	3.00e-70	258.00
IUUC-Vvi-131329	Vitis vinifera	66.67	2.00e-145	508.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence