iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-006703

UUCD1 version

UUC-ArT-00862

Ensembl Protein ID

AT5G40140.1

UniProt Accession

Q9FL17; PUB40_ARATH

Genbank Protein ID

BAB10895.1; AED94512.1

Protein Name

U-box domain-containing protein 40; Plant U-box protein 40; RING-type E3 ubiquitin transferase PUB40

Genbank Nucleotide ID

AB010699; CP002688

Gene Name

PUB40; At5g40140; MSN9.4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G40140	AT5G40140.1	AT5G40140.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	4.30e-17	62.8	57	123

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 1    evpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedl.vPnltlrrliqawcee 71
           e+p+eflCpIs+ lM dP +++sG++y+r+++  +     kt  +t +p  + +  +Pnl+l++ i++wce+
   Q: 57   EIPAEFLCPISGSLMADPIIVSSGHSYERACVIAC-----KTLGFTPTPPPDFSTvIPNLALKSAIHSWCER 123
           69******************************998.....5577788888776666**************97 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase.

Protein Sequence
(Fasta)

MEIQRPVINL MVLHSQHDKS DNLSRRESLA GKSKWRTSLS RSSSSSSSNN NSPTKTEIPA 60
EFLCPISGSL MADPIIVSSG HSYERACVIA CKTLGFTPTP PPDFSTVIPN LALKSAIHSW 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTTCTCTTTA CCTACCAAAA AAACCAAACC CTTGATTTTT AGTTTTTTAC ATCATAACAA 60
CTAAATAATG ATAATAGAAC AACATGACCA AGTCCATACT TCTTCTAAAC AATAAAATCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

ath:AT5G40140

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003157	Amborella trichopoda	44.17	2.00e-66	246.00
IUUC-Aly-005518	Arabidopsis lyrata	95.64	0.00e+00	960.00
IUUC-Bdi-014649	Brachypodium distachyon	35.45	3.00e-69	255.00
IUUC-Bol-015923	Brassica oleracea	84.24	0.00e+00	815.00
IUUC-Bra-016715	Brassica rapa	83.45	0.00e+00	767.00
IUUC-Gma-043475	Glycine max	48.65	1.00e-113	402.00
IUUC-Lpe-050893	Leersia perrieri	35.45	2.00e-54	205.00
IUUC-Mac-064560	Musa acuminata	37.65	9.00e-58	217.00
IUUC-Ogu-078801	Oryza glumaepatula	35.86	2.00e-35	143.00
IUUC-Ome-081170	Oryza meridionalis	35.53	2.00e-35	143.00
IUUC-Opu-084021	Oryza punctata	35.48	6.00e-50	191.00
IUUC-Ppe-101810	Prunus persica	55.28	2.00e-141	495.00
IUUC-Sly-111131	Solanum lycopersicum	57.64	2.00e-140	491.00
IUUC-Stu-112864	Solanum tuberosum	57.37	8.00e-130	456.00
IUUC-Tca-121304	Theobroma cacao	60.30	3.00e-158	551.00
IUUC-Tae-124240	Triticum aestivum	36.79	6.00e-71	261.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence