iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
HINT
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UBQ/UBQ_PIM	8.70e-19	68.1	21	94

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkks 74
           +++++ktl++++++l+v++   v +lKe++a+++gv  eqq+LI  Gk++kDd+ Ls+++++dg+++hlvv+++
   Q: 21   VEIKIKTLDSQTYTLRVDKCVPVPALKEQVASVTGVVTEQQRLICRGKVMKDDQLLSAYHVEDGHTLHLVVRQP 94
           589********************************************************************986 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MGDNGKDEIM VEASQCAGAM VEIKIKTLDS QTYTLRVDKC VPVPALKEQV ASVTGVVTEQ 60
QRLICRGKVM KDDQLLSAYH VEDGHTLHLV VRQPVSESST SNAAADPALS AGDSQGSQRS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATCTGAATAA ATTAATATCC TCTTTACTAA ATATGCCAAA GTCAAAGATA TTTTTACTTT 60
ATAAACCTCT CCTATTATGC AAAAAACCAA ATTTTATTTC TTACAATTCA GCAAAATTAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom

PROSITE

PS50053--UBIQUITIN_2

Pfam

PF00240--ubiquitin

PRINTS

PR00348--UBIQUITIN

SMART

SM00213--UBQ

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002841	Amborella trichopoda	43.30	3.00e-83	302.00
IUUC-Bdi-015055	Brachypodium distachyon	36.42	9.00e-70	257.00
IUUC-Bol-015630	Brassica oleracea	78.36	0.00e+00	863.00
IUUC-Bra-017052	Brassica rapa	78.15	0.00e+00	884.00
IUUC-Cin-025671	Ciona intestinalis	31.39	1.00e-14	72.80
IUUC-Gma-043829	Glycine max	37.61	7.00e-84	304.00
IUUC-Hvu-047698	Hordeum vulgare	35.56	1.00e-70	260.00
IUUC-Lpe-051647	Leersia perrieri	36.30	2.00e-61	229.00
IUUC-Mtr-058678	Medicago truncatula	39.74	5.00e-96	344.00
IUUC-Mac-064984	Musa acuminata	38.74	3.00e-63	235.00
IUUC-Oba-075736	Oryza barthii	35.05	7.00e-81	294.00
IUUC-Obr-076574	Oryza brachyantha	40.73	3.00e-75	275.00
IUUC-Ogl-077678	Oryza glaberrima	35.05	7.00e-81	294.00
IUUC-Ogu-078952	Oryza glumaepatula	35.07	1.00e-80	293.00
IUUC-Oin-079943	Oryza indica	35.17	2.00e-66	246.00
IUUC-Ome-081937	Oryza meridionalis	41.41	2.00e-74	273.00
IUUC-Oni-082471	Oryza nivara	35.20	4.00e-81	295.00
IUUC-Opu-083366	Oryza punctata	36.25	3.00e-81	295.00
IUUC-Oru-085170	Oryza rufipogon	35.22	4.00e-81	295.00
IUUC-Olu-087872	Ostreococcus lucimarinus	35.51	1.00e-10	60.80
IUUC-Ppa-095346	Physcomitrella patens	38.46	3.00e-55	210.00
IUUC-Pop-099341	Populus trichocarpa	44.55	5.00e-96	344.00
IUUC-Ppe-101251	Prunus persica	40.76	8.00e-102	363.00
IUUC-Sit-110231	Setaria italica	41.61	5.00e-61	228.00
IUUC-Sly-111426	Solanum lycopersicum	41.57	6.00e-108	384.00
IUUC-Stu-112680	Solanum tuberosum	67.89	4.00e-37	147.00
IUUC-Sbi-114712	Sorghum bicolor	42.12	8.00e-62	231.00
IUUC-Tca-121577	Theobroma cacao	40.30	7.00e-97	347.00
IUUC-Tae-125205	Triticum aestivum	40.40	2.00e-69	256.00
IUUC-Vvi-131493	Vitis vinifera	45.13	1.00e-107	383.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence