iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099449

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000354

Gene Name

POPTRDRAFT_912160; POPTR_0018s10760g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0018s10760	POPTR_0018s10760.1	POPTR_0018s10760.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	2.90e-06	28.8	128	170

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           Ca+Cl++f  +d +++lp C H+fh +C+  w         + +CPlCr
   Q: 128  CAVCLCEFepEDKLRLLPkCSHAFHMECIDTW------LLSHSTCPLCR 170
           ********88666*******************......89999*****8 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MNWVLLQIKE SPFISPTQQP YFLSQPPPQP KLDTDGFNLS TRVSPSILLI IIILAIIFFV 60
SGLLHLLVRF LSRPPNRETD DLESVTALQG QLQQLFHLHD AGVDQTFIDA LPVFHYKAII 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAAAATATGA ATTGGGTTCT CCTTCAAATC AAAGAAAGCC CCTTTATTTC TCCAACCCAG 60
CAACCATATT TTCTTTCTCA GCCACCTCCA CAACCAAAAC TTGATACTGA TGGTTTCAAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0018s10760g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002500	Amborella trichopoda	51.41	2.00e-90	325.00
IUUC-Aly-006179	Arabidopsis lyrata	54.73	5.00e-94	337.00
IUUC-Ath-006858	Arabidopsis thaliana	55.04	4.00e-97	347.00
IUUC-Bol-016067	Brassica oleracea	54.25	2.00e-93	335.00
IUUC-Bra-017063	Brassica rapa	54.14	1.00e-93	336.00
IUUC-Gma-043592	Glycine max	61.20	7.00e-136	476.00
IUUC-Hvu-047392	Hordeum vulgare	53.36	1.00e-53	202.00
IUUC-Lpe-051680	Leersia perrieri	43.59	3.00e-72	265.00
IUUC-Mtr-058782	Medicago truncatula	60.60	2.00e-128	451.00
IUUC-Mac-064639	Musa acuminata	49.14	2.00e-95	341.00
IUUC-Oba-075403	Oryza barthii	43.12	9.00e-73	266.00
IUUC-Obr-076503	Oryza brachyantha	51.27	9.00e-65	240.00
IUUC-Ogl-077574	Oryza glaberrima	43.22	7.00e-73	267.00
IUUC-Ogu-077986	Oryza glumaepatula	43.22	7.00e-73	267.00
IUUC-Oin-079091	Oryza indica	43.84	1.00e-72	266.00
IUUC-Ome-081627	Oryza meridionalis	50.68	7.00e-71	260.00
IUUC-Oni-082260	Oryza nivara	43.22	7.00e-73	267.00
IUUC-Opu-083578	Oryza punctata	50.80	2.00e-70	259.00
IUUC-Oru-084794	Oryza rufipogon	43.22	7.00e-73	267.00
IUUC-Osa-085348	Oryza sativa	43.22	7.00e-73	267.00
IUUC-Ppa-095806	Physcomitrella patens	40.26	3.00e-43	169.00
IUUC-Ppe-101557	Prunus persica	69.38	1.00e-161	561.00
IUUC-Sit-109852	Setaria italica	42.30	2.00e-65	243.00
IUUC-Sly-111133	Solanum lycopersicum	54.17	2.00e-114	405.00
IUUC-Stu-112868	Solanum tuberosum	55.19	4.00e-111	394.00
IUUC-Sbi-114435	Sorghum bicolor	44.56	1.00e-66	246.00
IUUC-Tca-121042	Theobroma cacao	67.79	2.00e-159	554.00
IUUC-Tae-124510	Triticum aestivum	41.16	4.00e-58	218.00
IUUC-Tur-126047	Triticum urartu	50.38	6.00e-55	207.00
IUUC-Vvi-130906	Vitis vinifera	67.13	2.00e-156	545.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence