iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-006583

UUCD1 version

UUC-ArT-00518

Ensembl Protein ID

AT5G13480.2

UniProt Accession

Q6NLV4; Q9FY53; FY_ARATH

Genbank Protein ID

CAC05425.1; AED91899.1; AAS76712.1

Protein Name

Flowering time control protein FY

Genbank Nucleotide ID

AL391710; CP002688; BT012225

Gene Name

FY; At5g13480; T6I14.10

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G13480	AT5G13480.1	AT5G13480.1
AT5G13480	AT5G13480.3	AT5G13480.3
AT5G13480	AT5G13480.2	AT5G13480.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.30e-36	123.1	217	253
UBD/Beta-Prp	5.10e-60	204.1	263	418

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDlrtgvll 36
           H++s+++l+f  +d  ++s+sdD t+kvWD++++v++
   Q: 217  HKESIRDLSFckTDLKFCSCSDDTTVKVWDFTKCVDE 253
           9**********888889***************99987 PP

UBD/Beta-Prp

   S: 13   itcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp.sgdkl 109
           +++v+++p ksll++g++d+ +k+wd+++g  l sl gh++ v +vk++++g++l+t+s+D++ik++d++t k +++++gh+++v+sl+++p   +++
   Q: 263  VKSVDWHPTKSLLVSGGKDQLVKLWDTRSGRELCSLHGHKNIVLSVKWNQNGNWLLTASKDQIIKLYDIRTMKELQSFRGHTKDVTSLAWHPcHEEYF 360
           67899***************************************************************************************888*** PP
   S: 110  vsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlk 167
           vsGs+d  i  w + ++    e+ + hd +v+ +++hp g ll sGs+D t ++W+ +
   Q: 361  VSGSSDGSICHWIVGHENPQIEIPNAHDNSVWDLAWHPIGYLLCSGSNDHTTKFWCRN 418
           *****************99999*********************************984 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Plays a role in the regulation of flowering time in the autonomous flowering pathway by decreasing FLOWERING LOCUS C mRNA levels. Required for the negative autoregulation of FCA expression. Acts probably as an RNA 3' end-processing factor. Required for growth and development in plants.

Protein Sequence
(Fasta)

MPQPPMMRQS SASSTNINPD YHHPSGPFDP NVDSFGAKRM RKHTQRRAVD YTSTVVRYIQ 60
FNELILYMEL KVESVYSIYV FVQARTWQRD SRDRTTLQPT PAAAVDMLPT VAYSDNPSTS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATATGTGTCT AATTGATAGG GTAGGCCAAG TAACAACATA CACCCAAAAA AAAAAAAATA 60
AAAAAAAAAA TAAAAAAATC GTGGAGATTA AAAAAGCTAA ACCAATCGAC TTCTTGATTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0217--Developmental protein
KW-0221--Differentiation
KW-0287--Flowering
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005847--C:mRNA cleavage and polyadenylation specificity factor complex
GO:0030154--P:cell differentiation
GO:0009908--P:flower development
GO:0006379--P:mRNA cleavage

KEGG

ath:AT5G13480

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001064	Aegilops tauschii	66.60	0.00e+00	656.00
IUUC-Aml-001363	Ailuropoda melanoleuca	50.69	2.00e-128	453.00
IUUC-Atr-003030	Amborella trichopoda	72.63	0.00e+00	673.00
IUUC-Apl-003409	Anas platyrhynchos	50.46	1.00e-126	447.00
IUUC-Aca-004694	Anolis carolinensis	50.46	6.00e-128	451.00
IUUC-Aly-006063	Arabidopsis lyrata	90.93	0.00e+00	890.00
IUUC-Ago-007805	Ashbya gossypii	45.67	5.00e-84	304.00
IUUC-Acl-008075	Aspergillus clavatus	38.85	4.00e-89	321.00
IUUC-Afl-008582	Aspergillus flavus	41.67	1.00e-88	319.00
IUUC-Afu-008817	Aspergillus fumigatus	39.35	7.00e-80	290.00
IUUC-Ani-009391	Aspergillus nidulans	40.27	9.00e-80	290.00
IUUC-Ang-009750	Aspergillus niger	46.93	4.00e-75	274.00
IUUC-Aor-010085	Aspergillus oryzae	41.00	8.00e-89	320.00
IUUC-Ate-010397	Aspergillus terreus	38.81	5.00e-89	321.00
IUUC-Ame-010741	Astyanax mexicanus	49.44	1.00e-74	274.00
IUUC-Bgr-012169	Blumeria graminis	46.02	9.00e-95	340.00
IUUC-Bta-013265	Bos taurus	50.69	2.00e-128	453.00
IUUC-Bci-013762	Botrytis cinerea	45.89	1.00e-95	343.00
IUUC-Bdi-014849	Brachypodium distachyon	68.97	0.00e+00	697.00
IUUC-Bol-015325	Brassica oleracea	79.11	0.00e+00	877.00
IUUC-Bra-017187	Brassica rapa	78.79	0.00e+00	857.00
IUUC-Cel-018378	Caenorhabditis elegans	41.51	4.00e-109	388.00
IUUC-Cja-019547	Callithrix jacchus	50.69	1.00e-128	454.00
IUUC-Cfa-020031	Canis familiaris	50.69	1.00e-128	454.00
IUUC-Cpo-021554	Cavia porcellus	53.73	9.00e-125	441.00
IUUC-Cre-022830	Chlamydomonas reinhardtii	44.41	2.00e-75	276.00
IUUC-Csa-023146	Chlorocebus sabaeus	50.46	3.00e-128	452.00
IUUC-Cho-024679	Choloepus hoffmanni	48.74	1.00e-113	404.00
IUUC-Cin-025415	Ciona intestinalis	49.87	7.00e-119	420.00
IUUC-Csv-026003	Ciona savignyi	47.73	4.00e-117	414.00
IUUC-Cgl-026391	Colletotrichum gloeosporioides	45.74	9.00e-96	343.00
IUUC-Cne-026983	Cryptococcus neoformans	42.31	3.00e-92	332.00
IUUC-Cme-027147	Cyanidioschyzon merolae	46.40	1.00e-107	382.00
IUUC-Dre-028545	Danio rerio	50.69	1.00e-127	450.00
IUUC-Dno-029677	Dasypus novemcinctus	50.69	7.00e-129	454.00
IUUC-Dse-031371	Dothistroma septosporum	44.62	1.00e-92	333.00
IUUC-Dme-031663	Drosophila melanogaster	47.30	2.00e-126	446.00
IUUC-Ete-032511	Echinops telfairi	44.68	4.00e-106	379.00
IUUC-Eca-034152	Equus caballus	50.69	2.00e-128	453.00
IUUC-Eeu-034560	Erinaceus europaeus	35.43	1.00e-38	154.00
IUUC-Fca-035820	Felis catus	50.69	2.00e-128	453.00
IUUC-Fox-037958	Fusarium oxysporum	45.89	2.00e-93	335.00
IUUC-Fso-038162	Fusarium solani	45.61	5.00e-93	334.00
IUUC-Gmo-039708	Gadus morhua	50.00	1.00e-126	447.00
IUUC-Ggr-040031	Gaeumannomyces graminis	42.23	1.00e-85	309.00
IUUC-Gga-040963	Gallus gallus	50.69	1.00e-128	453.00
IUUC-Gac-041541	Gasterosteus aculeatus	49.89	2.00e-123	436.00
IUUC-Gma-043757	Glycine max	73.31	0.00e+00	740.00
IUUC-Ggo-045564	Gorilla gorilla	50.69	1.00e-128	454.00
IUUC-Hsa-045833	Homo sapiens	50.69	1.00e-128	454.00
IUUC-Hvu-047848	Hordeum vulgare	72.36	6.00e-140	490.00
IUUC-Itr-048083	Ictidomys tridecemlineatus	50.69	2.00e-128	453.00
IUUC-Kpa-049308	Komagataella pastoris	39.59	1.00e-84	306.00
IUUC-Lch-050525	Latimeria chalumnae	50.69	6.00e-128	451.00
IUUC-Lpe-051364	Leersia perrieri	66.14	0.00e+00	659.00
IUUC-Loc-052696	Lepisosteus oculatus	48.60	7.00e-129	454.00
IUUC-Lma-052951	Leptosphaeria maculans	46.50	1.00e-95	343.00
IUUC-Laf-053653	Loxodonta africana	50.69	3.00e-128	452.00
IUUC-Mcc-055797	Macaca mulatta	50.69	1.00e-128	454.00
IUUC-Meu-056331	Macropus eugenii	49.28	4.00e-98	352.00
IUUC-Mor-057168	Magnaporthe oryzae	43.63	4.00e-92	331.00
IUUC-Mpo-057510	Magnaporthe poae	46.32	4.00e-61	227.00
IUUC-Mtr-058032	Medicago truncatula	71.98	0.00e+00	694.00
IUUC-Mla-058852	Melampsora laricipopulina	47.52	1.00e-102	366.00
IUUC-Mga-059311	Meleagris gallopavo	50.69	2.00e-128	453.00
IUUC-Mvi-060544	Microbotryum violaceum	53.12	8.00e-109	387.00
IUUC-Mmr-061143	Microcebus murinus	50.69	1.00e-128	454.00
IUUC-Mdo-061977	Monodelphis domestica	50.69	2.00e-128	453.00
IUUC-Mmu-063922	Mus musculus	50.69	2.00e-128	453.00
IUUC-Mac-064961	Musa acuminata	72.93	0.00e+00	738.00
IUUC-Mpu-066079	Mustela putorius furo	56.13	1.00e-116	414.00
IUUC-Mlu-067247	Myotis lucifugus	50.69	1.00e-128	454.00
IUUC-Nfi-068255	Neosartorya fischeri	41.33	1.00e-86	313.00
IUUC-Ncr-068909	Neurospora crassa	46.63	5.00e-98	351.00
IUUC-Nle-068994	Nomascus leucogenys	50.69	9.00e-129	454.00
IUUC-Opr-071079	Ochotona princeps	50.69	1.00e-128	454.00
IUUC-Ont-071971	Oreochromis niloticus	50.23	1.00e-126	447.00
IUUC-Oan-073135	Ornithorhynchus anatinus	54.05	3.00e-118	419.00
IUUC-Ocu-073982	Oryctolagus cuniculus	50.69	2.00e-128	452.00
IUUC-Oba-075297	Oryza barthii	68.14	0.00e+00	679.00
IUUC-Obr-076641	Oryza brachyantha	75.06	0.00e+00	704.00
IUUC-Ogl-077539	Oryza glaberrima	75.85	2.00e-149	521.00
IUUC-Ogu-078807	Oryza glumaepatula	68.14	0.00e+00	679.00
IUUC-Oin-079229	Oryza indica	72.14	0.00e+00	732.00
IUUC-Olo-080371	Oryza longistaminata	70.42	0.00e+00	650.00
IUUC-Ome-081149	Oryza meridionalis	68.00	0.00e+00	678.00
IUUC-Oni-082970	Oryza nivara	68.34	0.00e+00	681.00
IUUC-Opu-083415	Oryza punctata	67.67	0.00e+00	668.00
IUUC-Oru-085236	Oryza rufipogon	68.34	0.00e+00	681.00
IUUC-Ola-087421	Oryzias latipes	48.58	6.00e-129	453.00
IUUC-Olu-087821	Ostreococcus lucimarinus	49.87	3.00e-113	400.00
IUUC-Oga-088132	Otolemur garnettii	50.69	1.00e-128	453.00
IUUC-Oar-089513	Ovis aries	50.69	2.00e-128	453.00
IUUC-Ptr-090717	Pan troglodytes	50.69	1.00e-128	454.00
IUUC-Pan-092108	Papio anubis	50.69	1.00e-128	454.00
IUUC-Psi-093892	Pelodiscus sinensis	50.69	3.00e-128	452.00
IUUC-Pma-094561	Petromyzon marinus	51.51	3.00e-127	449.00
IUUC-Pno-094943	Phaeosphaeria nodorum	44.47	1.00e-95	343.00
IUUC-Ppa-095359	Physcomitrella patens	68.90	0.00e+00	634.00
IUUC-Pfo-096516	Poecilia formosa	50.12	6.00e-126	444.00
IUUC-Pab-097759	Pongo abelii	50.69	1.00e-128	454.00
IUUC-Pop-099553	Populus trichocarpa	72.94	0.00e+00	741.00
IUUC-Ppe-101957	Prunus persica	76.85	0.00e+00	751.00
IUUC-Pva-102918	Pteropus vampyrus	50.69	3.00e-128	452.00
IUUC-Pgr-103594	Puccinia graminis	50.67	8.00e-107	380.00
IUUC-Ptt-103879	Puccinia triticina	50.15	2.00e-94	339.00
IUUC-Pte-104419	Pyrenophora teres	41.10	1.00e-95	343.00
IUUC-Pyt-104718	Pyrenophora triticirepentis	44.47	3.00e-95	342.00
IUUC-Rno-105838	Rattus norvegicus	50.69	2.00e-128	453.00
IUUC-Sce-106331	Saccharomyces cerevisiae	39.22	7.00e-78	283.00
IUUC-Sha-107435	Sarcophilus harrisii	50.69	2.00e-128	453.00
IUUC-Sja-107796	Schizosaccharomyces japonicus	39.56	6.00e-94	337.00
IUUC-Spo-108163	Schizosaccharomyces pombe	41.99	2.00e-95	342.00
IUUC-Smo-108972	Selaginella moellendorffii	65.02	3.00e-174	603.00
IUUC-Sit-109729	Setaria italica	71.49	0.00e+00	714.00
IUUC-Sly-111679	Solanum lycopersicum	71.78	0.00e+00	712.00
IUUC-Sar-113157	Sorex araneus	50.69	3.00e-128	452.00
IUUC-Sbi-114853	Sorghum bicolor	71.54	0.00e+00	703.00
IUUC-Sre-115085	Sporisorium reilianum	40.80	2.00e-92	332.00
IUUC-Ssc-116286	Sus scrofa	50.58	6.00e-127	448.00
IUUC-Tgu-117219	Taeniopygia guttata	50.69	3.00e-128	452.00
IUUC-Tru-117550	Takifugu rubripes	50.23	2.00e-126	445.00
IUUC-Tsy-119294	Tarsius syrichta	50.69	8.00e-129	454.00
IUUC-Tni-120561	Tetraodon nigroviridis	50.23	4.00e-127	448.00
IUUC-Tca-121347	Theobroma cacao	75.10	0.00e+00	767.00
IUUC-Tre-122018	Trichoderma reesei	44.76	3.00e-94	338.00
IUUC-Tvi-122413	Trichoderma virens	44.76	5.00e-93	334.00
IUUC-Tae-123191	Triticum aestivum	68.18	0.00e+00	694.00
IUUC-Tme-127077	Tuber melanosporum	52.00	2.00e-104	372.00
IUUC-Tbe-127744	Tupaia belangeri	35.17	1.00e-62	234.00
IUUC-Ttr-128777	Tursiops truncatus	47.77	1.00e-101	364.00
IUUC-Uma-129568	Ustilago maydis	40.94	2.00e-90	325.00
IUUC-Vda-129834	Verticillium dahliae	43.28	9.00e-91	327.00
IUUC-Vpa-130563	Vicugna pacos	58.62	3.00e-28	119.00
IUUC-Vvi-131360	Vitis vinifera	75.40	0.00e+00	780.00
IUUC-Xtr-132630	Xenopus tropicalis	50.69	1.00e-129	457.00
IUUC-Xma-133665	Xiphophorus maculatus	50.46	1.00e-127	450.00
IUUC-Yli-134556	Yarrowia lipolytica	41.75	3.00e-78	285.00
IUUC-Zma-135787	Zea mays	72.01	0.00e+00	719.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence