iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Aly-006014

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Putative uncharacterized protein

Genbank Nucleotide ID

GL348716

Gene Name

COP1; ARALYDRAFT_902362

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
scaffold_401863.1	scaffold_401863.1	scaffold_401863.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.40e-31	107.8	547	584
E3 activity/RING/U-box	8.60e-09	36.0	48	111
UBD/Beta-Prp	2.60e-44	152.2	371	672

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlrtgvllk 37
           gH+  v+ ++f s++ l+s+s D t+++WD++++ +++
   Q: 547  GHKKAVSYVKFlSNNELASASTDSTLRLWDVKDHLPVR 584
           8999*******9889****************9998876 PP

E3 activity/RING/U-box

   S: 4    eeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqaw 68
           +++lCpI +++ +d   +++G+++   +I  +l+++   cP ++q+lt+++l Pn  l +l ++ 
   Q: 48   KDLLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKSD-CPCCSQHLTNNQLYPNFLLDKLLKKT 111
           6799*******************************999.****************9997777665 PP

UBD/Beta-Prp

   S: 10   ksvitcvkfspdksllatgsrdgtikvwdvttgkl........lrslsgheaevtavkfspdgk.ilvtgseDrtikvwdlstgkcvhtlkg 92
            + ++++ f +d++l+at++ +++ikv+d+++           + ++s  + + +++++++++k  ++++   +++ vwd+ t++ ++ +++
   Q: 371  ANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNepadmqcpIVEMSTRS-KLSCLSWNKHEKnHIASSDYEGIVTVWDVTTRQSLMEYEE 461
           567899**************************5559999998888887777.79*****99987566666666******************* PP
   S: 93   hedsvlslsfspsg.dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdl.ktgkllrtltgghtd 181
           he++++s++fs++  + lvsGs+d  ++vw ++++  + +++ +    ++cv+++p + n+++ Gs+D  +  +dl +  + l+ ++g h++
   Q: 462  HEKRAWSVDFSRTEpSMLVSGSDDCKVKVWCTRQEASVLNIDMKA--NICCVKYNPGSsNYVAVGSADHHIHYYDLrNISQPLHVFSG-HKK 550
           ************888***************999999887555555..59********9******************556899*****9.*** PP
   S: 182  svyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhn......... 264
           +v  ++f sn +el+s+s+d+t++lwd++    vrt++ght+  + v ++ n+e+l++gs+ + ++++   ++++++ ++ h+         
   Q: 551  AVSYVKFLSN-NELASASTDSTLRLWDVKDHLPVRTFRGHTNEKNFVGLTVNSEYLACGSETNEVYVY---HKEITRPVTSHRfgspdmdda 638
           *********8.7*******************************************************9...89999999999999999**** PP
   S: 265  .....ssvisvavlsfgdnvlvlgsedskvniwk 293
                s +is  +++ + + ++++ + ++++++ 
   Q: 639  eeeagSFFISAVCWKSDSPTMLTANSQGTIKVLV 672
           ****999999999*****************9975 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MEEISTDPLV PAVKPDPRTS SVGEGYNRNE NDDGGDGGSE IGAPDLDKDL LCPICMQIIK 60
DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP NFLLDKLLKK TSARQVSKTA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAACACAAT CGAAGAGAAA ATGGAGGAGA TTTCGACGGA TCCGCTTGTT CCAGCGGTGA 60
AACCTGACCC GAGGACATCT TCAGTCGGTG AAGGTTATAA TCGTAATGAA AATGATGACG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00400--WD40

SMART

SM00184--RING
SM00320--WD40

Gene Ontology

GO:0016604--C:nuclear body
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0046283--P:anthocyanin-containing compound metabolic process
GO:0006281--P:DNA repair
GO:0009649--P:entrainment of circadian clock
GO:0009640--P:photomorphogenesis
GO:0048573--P:photoperiodism, flowering
GO:0010119--P:regulation of stomatal movement
GO:0009641--P:shade avoidance

KEGG

aly:ARALYDRAFT_902362

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000885	Aegilops tauschii	71.29	0.00e+00	941.00
IUUC-Aml-001265	Ailuropoda melanoleuca	39.97	7.00e-124	437.00
IUUC-Atr-002460	Amborella trichopoda	74.40	0.00e+00	981.00
IUUC-Apl-003796	Anas platyrhynchos	39.45	3.00e-117	414.00
IUUC-Aca-005078	Anolis carolinensis	39.60	7.00e-123	434.00
IUUC-Ath-007636	Arabidopsis thaliana	97.93	0.00e+00	1392.00
IUUC-Ame-011176	Astyanax mexicanus	57.02	3.00e-39	155.00
IUUC-Bta-012595	Bos taurus	40.03	9.00e-125	440.00
IUUC-Bdi-014152	Brachypodium distachyon	71.79	0.00e+00	951.00
IUUC-Bol-016380	Brassica oleracea	93.34	0.00e+00	1296.00
IUUC-Bra-017690	Brassica rapa	92.47	0.00e+00	1271.00
IUUC-Cja-018926	Callithrix jacchus	39.72	2.00e-124	438.00
IUUC-Cfa-021088	Canis familiaris	40.06	1.00e-124	439.00
IUUC-Cpo-022442	Cavia porcellus	39.52	8.00e-118	417.00
IUUC-Csa-024119	Chlorocebus sabaeus	39.94	9.00e-124	437.00
IUUC-Cin-025375	Ciona intestinalis	39.22	2.00e-119	422.00
IUUC-Cme-027350	Cyanidioschyzon merolae	44.54	3.00e-94	339.00
IUUC-Dre-028453	Danio rerio	38.99	3.00e-123	435.00
IUUC-Dno-029887	Dasypus novemcinctus	39.42	2.00e-124	439.00
IUUC-Dor-031110	Dipodomys ordii	50.98	9.00e-91	327.00
IUUC-Ete-033016	Echinops telfairi	50.98	1.00e-90	327.00
IUUC-Eca-034403	Equus caballus	39.29	2.00e-116	412.00
IUUC-Eeu-034690	Erinaceus europaeus	51.06	3.00e-85	308.00
IUUC-Fca-036475	Felis catus	39.52	2.00e-117	415.00
IUUC-Fal-037189	Ficedula albicollis	39.94	3.00e-123	434.00
IUUC-Gmo-039245	Gadus morhua	38.50	4.00e-120	424.00
IUUC-Gga-040806	Gallus gallus	39.82	5.00e-124	437.00
IUUC-Gac-042177	Gasterosteus aculeatus	38.47	3.00e-123	435.00
IUUC-Gma-044187	Glycine max	77.94	0.00e+00	1068.00
IUUC-Ggo-044430	Gorilla gorilla	36.40	5.00e-77	281.00
IUUC-Hsa-045853	Homo sapiens	40.03	2.00e-124	439.00
IUUC-Itr-048238	Ictidomys tridecemlineatus	51.54	3.00e-68	250.00
IUUC-Lch-050420	Latimeria chalumnae	39.63	2.00e-124	438.00
IUUC-Lpe-051219	Leersia perrieri	72.71	0.00e+00	944.00
IUUC-Loc-052728	Lepisosteus oculatus	39.57	2.00e-117	416.00
IUUC-Laf-053775	Loxodonta africana	39.51	2.00e-124	439.00
IUUC-Meu-056595	Macropus eugenii	39.27	6.00e-56	211.00
IUUC-Mtr-058555	Medicago truncatula	77.65	0.00e+00	1099.00
IUUC-Mga-059646	Meleagris gallopavo	39.45	6.00e-117	414.00
IUUC-Mmr-060990	Microcebus murinus	39.97	1.00e-123	436.00
IUUC-Mdo-062287	Monodelphis domestica	40.03	3.00e-124	438.00
IUUC-Mmu-064097	Mus musculus	40.03	2.00e-124	439.00
IUUC-Mac-065240	Musa acuminata	75.16	0.00e+00	974.00
IUUC-Mpu-066612	Mustela putorius furo	39.68	2.00e-117	416.00
IUUC-Mlu-067967	Myotis lucifugus	39.23	1.00e-115	409.00
IUUC-Nle-069543	Nomascus leucogenys	40.03	2.00e-124	439.00
IUUC-Opr-070366	Ochotona princeps	43.37	7.00e-43	168.00
IUUC-Ont-071522	Oreochromis niloticus	39.18	3.00e-123	435.00
IUUC-Oan-073409	Ornithorhynchus anatinus	39.61	9.00e-116	410.00
IUUC-Ocu-073756	Oryctolagus cuniculus	39.81	2.00e-119	422.00
IUUC-Oba-075149	Oryza barthii	72.60	0.00e+00	959.00
IUUC-Obr-076563	Oryza brachyantha	73.69	0.00e+00	964.00
IUUC-Ogl-077701	Oryza glaberrima	72.96	0.00e+00	964.00
IUUC-Ogu-078383	Oryza glumaepatula	72.96	0.00e+00	964.00
IUUC-Oin-079965	Oryza indica	69.03	0.00e+00	884.00
IUUC-Olo-080639	Oryza longistaminata	70.97	0.00e+00	948.00
IUUC-Ome-081821	Oryza meridionalis	72.48	0.00e+00	890.00
IUUC-Oni-082622	Oryza nivara	72.96	0.00e+00	964.00
IUUC-Opu-083295	Oryza punctata	72.20	0.00e+00	962.00
IUUC-Oru-084661	Oryza rufipogon	72.96	0.00e+00	964.00
IUUC-Osa-085766	Oryza sativa	72.96	0.00e+00	964.00
IUUC-Ola-086727	Oryzias latipes	37.57	3.00e-125	441.00
IUUC-Oga-088215	Otolemur garnettii	39.65	2.00e-119	422.00
IUUC-Oar-089880	Ovis aries	39.65	2.00e-119	422.00
IUUC-Ptr-090597	Pan troglodytes	40.03	2.00e-124	439.00
IUUC-Pan-091987	Papio anubis	40.03	2.00e-124	439.00
IUUC-Psi-094033	Pelodiscus sinensis	39.94	2.00e-120	425.00
IUUC-Pma-094587	Petromyzon marinus	38.89	9.00e-109	386.00
IUUC-Ppa-095401	Physcomitrella patens	62.23	0.00e+00	834.00
IUUC-Pfo-097388	Poecilia formosa	38.34	2.00e-122	432.00
IUUC-Pab-098029	Pongo abelii	40.03	2.00e-124	439.00
IUUC-Pop-099319	Populus trichocarpa	77.10	0.00e+00	1090.00
IUUC-Pca-100846	Procavia capensis	45.63	2.00e-103	369.00
IUUC-Ppe-101250	Prunus persica	67.60	0.00e+00	876.00
IUUC-Pva-102407	Pteropus vampyrus	39.88	6.00e-121	427.00
IUUC-Rno-105312	Rattus norvegicus	40.03	3.00e-124	438.00
IUUC-Sha-106514	Sarcophilus harrisii	46.87	2.00e-98	351.00
IUUC-Smo-109418	Selaginella moellendorffii	62.23	0.00e+00	791.00
IUUC-Sit-110248	Setaria italica	73.43	0.00e+00	968.00
IUUC-Sly-110895	Solanum lycopersicum	75.98	0.00e+00	1068.00
IUUC-Stu-112386	Solanum tuberosum	73.28	0.00e+00	1019.00
IUUC-Sar-113230	Sorex araneus	42.52	1.00e-67	250.00
IUUC-Sbi-113962	Sorghum bicolor	70.35	0.00e+00	941.00
IUUC-Ssc-115987	Sus scrofa	29.28	2.00e-26	112.00
IUUC-Tgu-116471	Taeniopygia guttata	39.60	6.00e-123	434.00
IUUC-Tru-118231	Takifugu rubripes	46.13	9.00e-105	374.00
IUUC-Tsy-119415	Tarsius syrichta	39.34	9.00e-116	410.00
IUUC-Tni-120893	Tetraodon nigroviridis	46.13	8.00e-105	374.00
IUUC-Tca-121619	Theobroma cacao	79.83	0.00e+00	1127.00
IUUC-Tae-125524	Triticum aestivum	72.70	0.00e+00	970.00
IUUC-Tur-126557	Triticum urartu	72.60	0.00e+00	949.00
IUUC-Tbe-127253	Tupaia belangeri	42.81	5.00e-69	254.00
IUUC-Ttr-129100	Tursiops truncatus	39.53	9.00e-116	409.00
IUUC-Vpa-130613	Vicugna pacos	36.02	3.00e-100	358.00
IUUC-Vvi-131386	Vitis vinifera	74.67	0.00e+00	1045.00
IUUC-Xtr-132033	Xenopus tropicalis	39.94	6.00e-130	457.00
IUUC-Xma-133421	Xiphophorus maculatus	38.04	1.00e-122	432.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence