iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099229

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000344

Gene Name

POPTRDRAFT_765257; POPTR_0008s03560g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0008s03560	POPTR_0008s03560.1	POPTR_0008s03560.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	4.30e-34	117.5	247	319

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +p++f+CpIslelM+dPv++++G+ty+rs+I+kwl+ g+ktcP+t+q+l ++ l+Pn++l++li  wce+n++
   Q: 247  IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCESNGV 319
           89********************************************************************986 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MSLTGDPSSE LLSRLVDSVK EISGLPECRN VFKKTHGDLV RRIKLLSPMF EELKDNNEEL 60
SEEETKGFEL LRTVLDSAKE LLKSVVEGSK VYQTLQRDDI ADKINQITEK IEAALGEIPY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TAGAACTTTC TGCTCAGCTC CAAACTGTCC ATCTCTCTCT CTGCCGAAAA TCAAAGACTC 60
TCATGCTTTC ACATAAAAAC CTCTTCACTT CCATGGTGTT TAACGCTTCT CTTTGATAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR011987--ATPase_V1-cplx_hsu_C
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

pop:POPTR_0008s03560g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006103	Arabidopsis lyrata	68.48	0.00e+00	815.00
IUUC-Ath-006994	Arabidopsis thaliana	68.67	0.00e+00	807.00
IUUC-Bdi-014691	Brachypodium distachyon	63.89	0.00e+00	682.00
IUUC-Bol-016160	Brassica oleracea	66.99	0.00e+00	790.00
IUUC-Bra-016727	Brassica rapa	67.57	0.00e+00	801.00
IUUC-Gma-043496	Glycine max	75.52	0.00e+00	942.00
IUUC-Hvu-047272	Hordeum vulgare	63.76	0.00e+00	661.00
IUUC-Lpe-051517	Leersia perrieri	64.04	0.00e+00	654.00
IUUC-Mtr-057651	Medicago truncatula	75.65	0.00e+00	909.00
IUUC-Mac-065604	Musa acuminata	57.95	0.00e+00	642.00
IUUC-Oba-075750	Oryza barthii	58.64	0.00e+00	676.00
IUUC-Obr-076793	Oryza brachyantha	63.83	0.00e+00	647.00
IUUC-Ogl-077380	Oryza glaberrima	58.80	0.00e+00	677.00
IUUC-Ogu-078219	Oryza glumaepatula	58.80	0.00e+00	675.00
IUUC-Oin-079724	Oryza indica	59.30	0.00e+00	693.00
IUUC-Ome-081932	Oryza meridionalis	58.77	0.00e+00	677.00
IUUC-Oni-082439	Oryza nivara	58.80	0.00e+00	677.00
IUUC-Opu-083837	Oryza punctata	59.30	0.00e+00	695.00
IUUC-Oru-085172	Oryza rufipogon	58.97	0.00e+00	676.00
IUUC-Osa-085991	Oryza sativa	58.64	0.00e+00	677.00
IUUC-Ppe-101965	Prunus persica	71.45	0.00e+00	889.00
IUUC-Smo-109443	Selaginella moellendorffii	57.54	2.00e-171	595.00
IUUC-Sit-110461	Setaria italica	66.60	0.00e+00	640.00
IUUC-Sly-111662	Solanum lycopersicum	74.07	0.00e+00	899.00
IUUC-Stu-111979	Solanum tuberosum	74.24	0.00e+00	900.00
IUUC-Sbi-114550	Sorghum bicolor	60.80	0.00e+00	678.00
IUUC-Tca-121269	Theobroma cacao	81.83	0.00e+00	985.00
IUUC-Tae-124061	Triticum aestivum	63.40	0.00e+00	674.00
IUUC-Tur-126276	Triticum urartu	60.91	3.00e-180	624.00
IUUC-Vvi-131729	Vitis vinifera	77.19	0.00e+00	928.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence