iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007048

UUCD1 version

UUC-ArT-00653

Ensembl Protein ID

AT1G12760.1

UniProt Accession

Q9LN71; Q2V4N8; RING1_ARATH

Genbank Protein ID

AAY63561.1; AAF88088.1; AEE28924.1; AAM97036.1; AAN15598.1

Protein Name

E3 ubiquitin-protein ligase At1g12760; RING finger protein At1g12760; RING-type E3 ubiquitin transferase At1g12760

Genbank Nucleotide ID

DQ059089; AC025417; CP002684; AY136370; BT000279

Gene Name

At1g12760; T12C24.29

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G12760	AT1G12760.1	AT1G12760.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	16339806

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	7.80e-08	33.6	353	394

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C+iCl+ ++dg  ++ lpCgH+fh +C+ kw       + +++CPlC+
   Q: 353  CCICLSAYEDGteLRELPCGHHFHCSCVDKW------LYINATCPLCK 394
           ********88744777***************......**********7 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Mediates E2-dependent protein ubiquitination in vitro.

Protein Sequence
(Fasta)

MSTETTTGNS SLIPASSSSS SSDAIDPAPL LFNGDDNEGN NGGGGGERRS VRRQGLREAA 60
RFLSRASSGR VMREPSMLVR EAAAEQLEER QSDWAYSKPV VVLDIVWNLA FVSVATAILV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTGAGAGAT TATTTTTCTG TTAATTTCCC TTAATCATCA TCATCGTCTT CATCATCATC 60
TCTCTCTCTT CTCTTCGTTC CTCTTTCTTT ACACGCTTGA AACCCTAGCA ATTTCAATTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT1G12760

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000315	Aegilops tauschii	62.28	5.00e-82	296.00
IUUC-Aly-006096	Arabidopsis lyrata	96.44	1.00e-154	538.00
IUUC-Bol-015152	Brassica oleracea	85.52	1.00e-143	502.00
IUUC-Bra-018052	Brassica rapa	85.36	4.00e-144	503.00
IUUC-Gma-043453	Glycine max	71.64	1.00e-121	429.00
IUUC-Mtr-058719	Medicago truncatula	71.93	4.00e-115	407.00
IUUC-Obr-076817	Oryza brachyantha	60.14	2.00e-80	291.00
IUUC-Olo-080611	Oryza longistaminata	62.73	1.00e-82	301.00
IUUC-Ppa-095516	Physcomitrella patens	57.87	3.00e-101	361.00
IUUC-Pop-099381	Populus trichocarpa	71.21	1.00e-113	402.00
IUUC-Ppe-102030	Prunus persica	71.07	4.00e-122	430.00
IUUC-Ssl-108585	Sclerotinia sclerotiorum	53.06	4.00e-10	58.90
IUUC-Sbi-114737	Sorghum bicolor	63.53	2.00e-106	378.00
IUUC-Tae-124699	Triticum aestivum	62.80	3.00e-107	380.00
IUUC-Vda-129814	Verticillium dahliae	52.94	8.00e-11	61.60
IUUC-Vvi-130970	Vitis vinifera	67.47	2.00e-108	385.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence