iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Osa-085313

UUCD1 version

UUC-OrS-00246

Ensembl Protein ID

OS12T0570000-01

UniProt Accession

Q0IMG9; Q2QND2; Q64HA9; SL11_ORYSJ

Genbank Protein ID

AAT94160.1; AAT94161.1; ABA99652.1; BAF30096.2

Protein Name

E3 ubiquitin-protein ligase SPL11; Cell death-related protein SPL11; Protein spotted leaf 11; RING-type E3 ubiquitin transferase SPL11

Genbank Nucleotide ID

AY652589; AY652590; DP000011; AP008218; AP014968

Gene Name

SPL11; Os12g0570000; LOC_Os12g38210

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OS12G0570000	OS12T0570000-01	OS12T0570000-01

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/U-box	U-box	23499843; 24498057; 24794921

Classification

Family	E-value	Score	Start	End
E3 activity/RING/U-box	2.60e-35	121.2	96	168
E3 activity/RING/RING	0.0013	20.1	102	139

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +p+ef+CpIslelM+dPv++++G+ty+r++Iekw+asg++tcP+t+q+++ + l+Pn++lr+li++wce+n+ 
   Q: 96   IPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLRSLISQWCETNGM 168
           8*********************************************************************985 PP

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPl 44
           C+i le +kd p++++ g ++ + C++kw      +s++ +CP+
   Q: 102  CPISLELMKD-PVIVSTGQTYERACIEKW-----IASGHHTCPT 139
           **********.999***************.....79*******6 PP

Organism

Oryza sativa

Functional Description
(View)

E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1.

Protein Sequence
(Fasta)

LSVYDKNYDP SAELAILGRL SEKLHLMTIT DLTQESLALH EMVASGGGQD PGEHIERMSM 60
LLKKIKDFVQ TQNPDMGPPM ASRVLDSNGD SRPITIPDEF RCPISLELMK DPVIVSTGQT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TACTATCTGT ATATGACAAG AACTATGACC CAAGTGCAGA ACTGGCTATT CTTGGAAGAT 60
TGTCAGAAAA GCTACACTTG ATGACAATCA CCGATCTCAC GCAAGAATCA CTCGCCTTAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0287--Flowering
KW-0539--Nucleus
KW-0611--Plant defense
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR011987--ATPase_V1-cplx_hsu_C
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005829--C:cytosol
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity
GO:0006952--P:defense response
GO:0009908--P:flower development
GO:0031348--P:negative regulation of defense response
GO:0043069--P:negative regulation of programmed cell death
GO:0016567--P:protein ubiquitination
GO:0048586--P:regulation of long-day photoperiodism, flowering

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000439	Aegilops tauschii	86.54	0.00e+00	884.00
IUUC-Bdi-014829	Brachypodium distachyon	85.19	0.00e+00	872.00
IUUC-Hvu-047396	Hordeum vulgare	86.44	0.00e+00	845.00
IUUC-Lpe-051065	Leersia perrieri	96.71	0.00e+00	969.00
IUUC-Oba-075101	Oryza barthii	99.81	0.00e+00	982.00
IUUC-Obr-076784	Oryza brachyantha	94.14	0.00e+00	928.00
IUUC-Ogl-077638	Oryza glaberrima	99.81	0.00e+00	982.00
IUUC-Ogu-078222	Oryza glumaepatula	99.81	0.00e+00	981.00
IUUC-Oin-079280	Oryza indica	97.29	0.00e+00	971.00
IUUC-Olo-080852	Oryza longistaminata	99.03	0.00e+00	972.00
IUUC-Ome-081164	Oryza meridionalis	99.03	0.00e+00	976.00
IUUC-Oni-083018	Oryza nivara	97.29	0.00e+00	972.00
IUUC-Opu-083626	Oryza punctata	98.84	0.00e+00	974.00
IUUC-Oru-084907	Oryza rufipogon	100.00	0.00e+00	983.00
IUUC-Sit-110392	Setaria italica	89.15	0.00e+00	890.00
IUUC-Sbi-114583	Sorghum bicolor	88.48	6.00e-175	605.00
IUUC-Tae-123841	Triticum aestivum	82.27	0.00e+00	812.00
IUUC-Tur-126448	Triticum urartu	86.71	0.00e+00	869.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence