iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Dre-028085

Ensembl Protein ID

ENSDARP00000127037.1

UniProt Accession

R4GEX4; R4GEX4_DANRE

Genbank Protein ID

ENSDARP00000127037

Protein Name

Eukaryotic translation initiation factor 3, subunit F

Genbank Nucleotide ID

CR854964

Gene Name

eif3f

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSDARG00000077533.4	ENSDART00000152562.1	ENSDARP00000127037.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/JAMM	80.30	3.00e-128	455.00	IUUC-Hsa-046860

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Danio rerio

Protein Sequence
(Fasta)

IIFYFLFEIM AVHGPVVKIH PVVLASIVDS YERRNEGASR VIGTLLGTAD KHSVDVTNCF 60
SVPHNESEDE VAVDMEFAKN MYELHKKVSP SEVIVGWYAT GFDITEHSVL IHEYYSREAP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATCATCTTTT ACTTCCTCTT CGAAATCATG GCGGTGCACG GCCCGGTCGT GAAAATCCAC 60
CCGGTGGTTT TGGCTTCGAT TGTGGACTCA TACGAGCGCA GGAATGAAGG AGCGAGTCGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR027531--eIF3f
IPR000555--JAMM/MPN+_dom
IPR024969--Rpn11/EIF3F_C

Pfam

PF01398--JAB
PF13012--MitMem_reg

SMART

SM00232--JAB_MPN

Gene Ontology

GO:0071541--C:eukaryotic translation initiation factor 3 complex, eIF3m
GO:0003743--F:translation initiation factor activity
GO:0031369--F:translation initiation factor binding
GO:0006413--P:translational initiation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001150	Aegilops tauschii	35.00	2.00e-44	172.00
IUUC-Aml-001527	Ailuropoda melanoleuca	80.52	2.00e-129	455.00
IUUC-Atr-002686	Amborella trichopoda	42.21	2.00e-50	192.00
IUUC-Apl-003977	Anas platyrhynchos	79.46	2.00e-107	380.00
IUUC-Aca-004335	Anolis carolinensis	79.55	2.00e-127	449.00
IUUC-Aly-005945	Arabidopsis lyrata	39.16	2.00e-50	192.00
IUUC-Ath-007045	Arabidopsis thaliana	39.92	1.00e-50	192.00
IUUC-Acl-008365	Aspergillus clavatus	36.03	5.00e-43	168.00
IUUC-Afl-008742	Aspergillus flavus	37.00	5.00e-42	164.00
IUUC-Afu-009030	Aspergillus fumigatus	35.66	1.00e-42	167.00
IUUC-Ani-009212	Aspergillus nidulans	36.86	1.00e-43	170.00
IUUC-Ang-009712	Aspergillus niger	35.77	5.00e-42	165.00
IUUC-Aor-009885	Aspergillus oryzae	37.00	5.00e-44	171.00
IUUC-Ate-010315	Aspergillus terreus	37.13	3.00e-41	162.00
IUUC-Ame-010801	Astyanax mexicanus	58.39	5.00e-79	287.00
IUUC-Bgr-011982	Blumeria graminis	33.09	5.00e-40	158.00
IUUC-Bta-012804	Bos taurus	80.67	1.00e-129	456.00
IUUC-Bci-013891	Botrytis cinerea	33.82	4.00e-37	148.00
IUUC-Bdi-014328	Brachypodium distachyon	39.16	6.00e-46	177.00
IUUC-Bol-015446	Brassica oleracea	39.54	2.00e-50	192.00
IUUC-Bra-016862	Brassica rapa	39.92	4.00e-51	194.00
IUUC-Cel-018171	Caenorhabditis elegans	34.84	2.00e-45	176.00
IUUC-Cja-019335	Callithrix jacchus	80.30	2.00e-129	455.00
IUUC-Cfa-020138	Canis familiaris	80.15	7.00e-129	453.00
IUUC-Cpo-022109	Cavia porcellus	70.91	1.00e-110	393.00
IUUC-Cre-022664	Chlamydomonas reinhardtii	42.54	2.00e-63	236.00
IUUC-Csa-023994	Chlorocebus sabaeus	80.30	2.00e-129	455.00
IUUC-Cho-024351	Choloepus hoffmanni	60.97	7.00e-89	320.00
IUUC-Cin-025801	Ciona intestinalis	55.60	2.00e-85	308.00
IUUC-Csv-025805	Ciona savignyi	54.85	5.00e-84	304.00
IUUC-Cgl-026643	Colletotrichum gloeosporioides	30.18	3.00e-35	142.00
IUUC-Cne-026868	Cryptococcus neoformans	30.29	7.00e-32	130.00
IUUC-Cme-027328	Cyanidioschyzon merolae	25.70	6.00e-21	95.10
IUUC-Dno-030099	Dasypus novemcinctus	80.15	7.00e-129	453.00
IUUC-Dor-030324	Dipodomys ordii	72.28	2.00e-111	395.00
IUUC-Dse-031314	Dothistroma septosporum	38.18	5.00e-49	188.00
IUUC-Dme-031926	Drosophila melanogaster	49.63	2.00e-78	285.00
IUUC-Ete-032569	Echinops telfairi	74.72	2.00e-117	415.00
IUUC-Eca-033502	Equus caballus	77.32	8.00e-122	430.00
IUUC-Eeu-034883	Erinaceus europaeus	62.16	4.00e-60	223.00
IUUC-Fca-035873	Felis catus	80.52	3.00e-129	454.00
IUUC-Fal-036921	Ficedula albicollis	79.93	9.00e-130	456.00
IUUC-Fox-037765	Fusarium oxysporum	31.29	1.00e-30	127.00
IUUC-Fso-038240	Fusarium solani	32.37	3.00e-33	135.00
IUUC-Gmo-038864	Gadus morhua	88.64	7.00e-146	509.00
IUUC-Ggr-039862	Gaeumannomyces graminis	29.75	2.00e-31	130.00
IUUC-Gga-040952	Gallus gallus	79.93	9.00e-130	456.00
IUUC-Gac-041677	Gasterosteus aculeatus	85.56	1.00e-143	502.00
IUUC-Gma-043061	Glycine max	39.92	6.00e-49	187.00
IUUC-Ggo-045591	Gorilla gorilla	80.30	9.00e-130	456.00
IUUC-Hsa-046860	Homo sapiens	80.30	2.00e-129	455.00
IUUC-Itr-048211	Ictidomys tridecemlineatus	80.15	7.00e-129	453.00
IUUC-Lch-049410	Latimeria chalumnae	70.95	6.00e-83	300.00
IUUC-Lpe-051102	Leersia perrieri	39.61	7.00e-46	177.00
IUUC-Loc-052016	Lepisosteus oculatus	78.39	8.00e-123	432.00
IUUC-Lma-053157	Leptosphaeria maculans	35.77	1.00e-45	177.00
IUUC-Laf-054568	Loxodonta africana	79.93	4.00e-129	454.00
IUUC-Mcc-054613	Macaca mulatta	80.30	1.00e-129	456.00
IUUC-Meu-056832	Macropus eugenii	60.00	9.00e-67	246.00
IUUC-Mor-057104	Magnaporthe oryzae	30.04	2.00e-31	129.00
IUUC-Mtr-058445	Medicago truncatula	40.68	1.00e-60	226.00
IUUC-Mla-059038	Melampsora laricipopulina	32.53	8.00e-34	137.00
IUUC-Mga-059548	Meleagris gallopavo	79.24	1.00e-112	399.00
IUUC-Mvi-060520	Microbotryum violaceum	28.33	6.00e-24	104.00
IUUC-Mdo-062376	Monodelphis domestica	80.15	2.00e-128	451.00
IUUC-Mmu-063254	Mus musculus	80.52	8.00e-129	453.00
IUUC-Mac-065635	Musa acuminata	40.28	5.00e-51	194.00
IUUC-Mpu-066314	Mustela putorius furo	80.52	3.00e-129	454.00
IUUC-Mlu-067512	Myotis lucifugus	80.90	2.00e-129	455.00
IUUC-Nfi-068262	Neosartorya fischeri	35.66	9.00e-43	167.00
IUUC-Ncr-068872	Neurospora crassa	31.27	3.00e-33	135.00
IUUC-Nle-070118	Nomascus leucogenys	80.52	3.00e-129	454.00
IUUC-Opr-071228	Ochotona princeps	79.57	4.00e-112	397.00
IUUC-Ont-072600	Oreochromis niloticus	89.22	7.00e-145	506.00
IUUC-Oan-073584	Ornithorhynchus anatinus	79.66	2.00e-114	404.00
IUUC-Ocu-074542	Oryctolagus cuniculus	80.52	2.00e-129	455.00
IUUC-Oba-075923	Oryza barthii	38.21	2.00e-47	182.00
IUUC-Obr-076313	Oryza brachyantha	39.61	6.00e-47	181.00
IUUC-Ogl-076932	Oryza glaberrima	38.21	2.00e-47	182.00
IUUC-Ogu-078152	Oryza glumaepatula	38.21	2.00e-47	182.00
IUUC-Oin-079528	Oryza indica	38.21	2.00e-47	182.00
IUUC-Olo-080401	Oryza longistaminata	38.21	2.00e-47	182.00
IUUC-Ome-081553	Oryza meridionalis	38.57	1.00e-47	183.00
IUUC-Oni-082090	Oryza nivara	38.21	2.00e-47	182.00
IUUC-Opu-083583	Oryza punctata	39.61	3.00e-46	179.00
IUUC-Oru-084492	Oryza rufipogon	38.21	2.00e-47	182.00
IUUC-Osa-085383	Oryza sativa	38.21	2.00e-47	182.00
IUUC-Ola-086835	Oryzias latipes	86.96	7.00e-145	506.00
IUUC-Olu-087716	Ostreococcus lucimarinus	29.81	1.00e-29	123.00
IUUC-Oga-088886	Otolemur garnettii	80.90	9.00e-130	456.00
IUUC-Oar-090079	Ovis aries	80.67	7.00e-130	456.00
IUUC-Ptr-091457	Pan troglodytes	80.30	2.00e-129	455.00
IUUC-Pan-092317	Papio anubis	76.76	6.00e-82	296.00
IUUC-Psi-093129	Pelodiscus sinensis	73.75	1.00e-113	402.00
IUUC-Pma-094488	Petromyzon marinus	76.19	9.00e-126	442.00
IUUC-Pno-095049	Phaeosphaeria nodorum	35.77	4.00e-46	178.00
IUUC-Ppa-095341	Physcomitrella patens	42.70	7.00e-65	240.00
IUUC-Pfo-096286	Poecilia formosa	88.64	4.00e-146	510.00
IUUC-Pab-097765	Pongo abelii	80.30	2.00e-129	455.00
IUUC-Pop-099131	Populus trichocarpa	40.30	1.00e-54	206.00
IUUC-Pca-100524	Procavia capensis	66.09	2.00e-84	305.00
IUUC-Ppe-101934	Prunus persica	41.83	2.00e-60	225.00
IUUC-Pva-102577	Pteropus vampyrus	80.52	2.00e-129	455.00
IUUC-Pgr-103521	Puccinia graminis	30.52	1.00e-32	134.00
IUUC-Pte-104304	Pyrenophora teres	35.90	6.00e-46	177.00
IUUC-Pyt-104563	Pyrenophora triticirepentis	35.90	5.00e-46	178.00
IUUC-Rno-105717	Rattus norvegicus	80.52	5.00e-129	454.00
IUUC-Sha-107190	Sarcophilus harrisii	80.84	6.00e-126	443.00
IUUC-Sja-107918	Schizosaccharomyces japonicus	36.43	3.00e-47	181.00
IUUC-Spo-108355	Schizosaccharomyces pombe	36.88	2.00e-47	182.00
IUUC-Smo-109374	Selaginella moellendorffii	43.70	1.00e-66	246.00
IUUC-Sit-110119	Setaria italica	40.00	3.00e-47	181.00
IUUC-Sly-111570	Solanum lycopersicum	38.24	3.00e-48	185.00
IUUC-Stu-112308	Solanum tuberosum	40.08	2.00e-53	202.00
IUUC-Sar-113515	Sorex araneus	75.53	2.00e-39	154.00
IUUC-Sbi-114605	Sorghum bicolor	39.16	5.00e-47	181.00
IUUC-Sre-114906	Sporisorium reilianum	43.43	3.00e-57	215.00
IUUC-Tgu-117087	Taeniopygia guttata	78.39	2.00e-111	394.00
IUUC-Tru-117700	Takifugu rubripes	85.51	2.00e-143	501.00
IUUC-Tni-120470	Tetraodon nigroviridis	88.28	6.00e-146	509.00
IUUC-Tca-121109	Theobroma cacao	40.68	9.00e-49	187.00
IUUC-Tre-122095	Trichoderma reesei	33.33	1.00e-33	137.00
IUUC-Tvi-122580	Trichoderma virens	32.97	6.00e-33	134.00
IUUC-Tae-125129	Triticum aestivum	38.04	7.00e-49	187.00
IUUC-Tur-126658	Triticum urartu	33.80	2.00e-41	162.00
IUUC-Tme-127043	Tuber melanosporum	39.71	8.00e-50	190.00
IUUC-Tbe-127927	Tupaia belangeri	80.52	3.00e-129	454.00
IUUC-Ttr-129231	Tursiops truncatus	80.90	9.00e-130	456.00
IUUC-Uma-129578	Ustilago maydis	42.70	2.00e-55	209.00
IUUC-Vda-129730	Verticillium dahliae	31.41	2.00e-37	149.00
IUUC-Vpa-130677	Vicugna pacos	49.64	6.00e-28	118.00
IUUC-Vvi-130968	Vitis vinifera	40.68	1.00e-53	203.00
IUUC-Xtr-132203	Xenopus tropicalis	81.85	4.00e-132	463.00
IUUC-Xma-133972	Xiphophorus maculatus	88.28	2.00e-145	508.00
IUUC-Yli-134553	Yarrowia lipolytica	38.32	4.00e-45	174.00
IUUC-Zma-134941	Zea mays	40.75	6.00e-45	174.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence