iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ata-000088

Ensembl Protein ID

EMT16092

UniProt Accession

R7W5B8; R7W5B8_AEGTA

Genbank Protein ID

EMT16092.1

Protein Name

Putative DNA repair protein RAD23-1

Genbank Nucleotide ID

KD538783

Gene Name

F775_29849

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
F775_29849	EMT16092	EMT16092

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	3.50e-23	81.8	213	253
ULD/UDP/UBQ/UBQ_PIM	1.20e-17	64.3	79	145

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 4    edkleqlveMG...FdreealqaLraannnleaAveyLldg 41
             +++q++eMG   +dr+++++aLraa+nn+e+A++yL++g
   Q: 213  DTMINQIMEMGggsWDRDKVQRALRAAYNNPERAIDYLYSG 253
           679***********************************986 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 12   efelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           +f+ + + ++ + ++K++i++ +g   +p  qq LI++Gk+LkD++tL e++++++ +++++++ksk
   Q: 79   HFPRQNTLSEQIMAVKKNIEEIQGkdsYPWGQQLLIHNGKVLKDESTLDENQVSEDGFLVVMLSKSK 145
           57777888999*****************************************************997 PP

Organism

Aegilops tauschii

Protein Sequence
(Fasta)

MKLTVKTLKG THFEIRVQHN DTTGIPVLPQ LPRDEEAQGP YHPRLLPVGI LPGTPIRQGL 60
SYSRCAVRNA HGREHLGPHF PRQNTLSEQI MAVKKNIEEI QGKDSYPWGQ QLLIHNGKVL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAAGCTGA CGGTGAAGAC TCTCAAGGGC ACCCACTTCG AGATCCGGGT CCAGCACAAT 60
GACACCGTGA GATTCCCCCC GCCCGCTCCC CTCATTTAGT TCCAAATTTC CCCGACTTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Interpro

IPR004806--Rad23
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ats:F775_29849

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006159	Arabidopsis lyrata	56.38	4.00e-92	330.00
IUUC-Ath-007157	Arabidopsis thaliana	52.50	1.00e-86	312.00
IUUC-Bdi-014355	Brachypodium distachyon	76.98	3.00e-136	477.00
IUUC-Bol-015272	Brassica oleracea	53.67	6.00e-86	310.00
IUUC-Bra-016970	Brassica rapa	55.87	6.00e-90	323.00
IUUC-Cpo-022145	Cavia porcellus	44.76	3.00e-19	88.60
IUUC-Cgl-026495	Colletotrichum gloeosporioides	46.53	2.00e-17	82.40
IUUC-Dse-031336	Dothistroma septosporum	48.51	4.00e-19	88.20
IUUC-Ete-032583	Echinops telfairi	40.71	7.00e-16	77.80
IUUC-Fso-038107	Fusarium solani	48.15	2.00e-20	92.80
IUUC-Gma-044245	Glycine max	57.00	4.00e-99	353.00
IUUC-Hvu-047738	Hordeum vulgare	77.92	7.00e-94	335.00
IUUC-Mtr-058239	Medicago truncatula	54.99	7.00e-87	313.00
IUUC-Mac-064468	Musa acuminata	57.97	3.00e-104	371.00
IUUC-Oba-074972	Oryza barthii	61.38	6.00e-114	402.00
IUUC-Obr-076909	Oryza brachyantha	67.43	2.00e-123	434.00
IUUC-Ogl-077067	Oryza glaberrima	67.62	4.00e-124	437.00
IUUC-Ogu-078023	Oryza glumaepatula	66.09	8.00e-105	372.00
IUUC-Oin-079203	Oryza indica	67.80	2.00e-125	441.00
IUUC-Olo-080559	Oryza longistaminata	64.80	9.00e-118	416.00
IUUC-Oni-082812	Oryza nivara	61.38	1.00e-113	402.00
IUUC-Opu-083963	Oryza punctata	63.59	1.00e-110	391.00
IUUC-Oru-084942	Oryza rufipogon	58.02	2.00e-122	431.00
IUUC-Osa-085951	Oryza sativa	68.06	2.00e-125	441.00
IUUC-Psi-093477	Pelodiscus sinensis	40.59	4.00e-14	71.60
IUUC-Pno-095064	Phaeosphaeria nodorum	43.43	3.00e-12	65.50
IUUC-Pop-100054	Populus trichocarpa	52.78	5.00e-88	317.00
IUUC-Ppe-101522	Prunus persica	53.19	7.00e-92	329.00
IUUC-Ssl-108382	Sclerotinia sclerotiorum	45.63	4.00e-18	85.10
IUUC-Smo-109518	Selaginella moellendorffii	43.32	2.00e-64	238.00
IUUC-Sit-109813	Setaria italica	68.19	2.00e-120	424.00
IUUC-Stu-112306	Solanum tuberosum	53.06	2.00e-89	322.00
IUUC-Sbi-114459	Sorghum bicolor	68.88	1.00e-124	438.00
IUUC-Tsy-118836	Tarsius syrichta	40.71	6.00e-16	77.80
IUUC-Tca-121594	Theobroma cacao	54.04	4.00e-90	324.00
IUUC-Tae-125620	Triticum aestivum	86.41	1.00e-142	498.00
IUUC-Tur-126144	Triticum urartu	86.59	3.00e-172	597.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence