iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Aly-005498

Ensembl Protein ID

fgenesh2_kg.3__189__AT3G02540.1

UniProt Accession

D7KZI5; D7KZI5_ARALL

Genbank Protein ID

EFH60585.1

Protein Name

Putative uncharacterized protein

Genbank Nucleotide ID

GL348715

Gene Name

RAD23C; ARALYDRAFT_477488

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh2_kg.3__189__AT3G02540.1	fgenesh2_kg.3__189__AT3G02540.1	fgenesh2_kg.3__189__AT3G02540.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	2.20e-24	85.5	185	226
ULD/UDP/UBQ/UBQ_PIM	7.90e-25	87.3	1	78

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 3    dedkleqlveMG...FdreealqaLraannnleaAveyLldg 41
           +e+ ++q+ +MG   +dre++++aLraa+nn+e+AveyL++g
   Q: 185  LESTIQQILDMGggtWDRETVVRALRAAFNNPERAVEYLYTG 226
           799*************************************87 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           mk++vktlkg++fe+ev+ +d+v+++K++i++++g   +p+++q LI++Gk+LkD+tt++e+++ ++s+++++++ksk
   Q: 1    MKIFVKTLKGTHFEIEVKLEDSVADVKKNIETVQGadvYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVVMLNKSK 78
           99************************************************************************9997 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MKIFVKTLKG THFEIEVKLE DSVADVKKNI ETVQGADVYP AAKQMLIHQG KVLKDETTIE 60
ENKVAENSFI VVMLNKSKPA STGASSASAG TSQAKSTPPS TSQPSISPQT PASVAAPVAP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACAAGCCATG TGCTTCGGCC ACAATCCAGT GGGAGATATC GAGGGAACGC AAAGGTAGGG 60
GCCAGATTCT GTAGTACCCT CTTCACCTAC CTACTCTCTT TCTCGAATTT ATTTGCCGGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

aly:ARALYDRAFT_477488

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000770	Aegilops tauschii	65.99	3.00e-83	301.00
IUUC-Aml-001195	Ailuropoda melanoleuca	40.38	1.00e-32	133.00
IUUC-Atr-003116	Amborella trichopoda	80.08	4.00e-101	360.00
IUUC-Apl-003371	Anas platyrhynchos	39.54	2.00e-34	139.00
IUUC-Ath-006676	Arabidopsis thaliana	97.34	2.00e-133	468.00
IUUC-Ame-011107	Astyanax mexicanus	42.19	2.00e-28	119.00
IUUC-Bdi-014253	Brachypodium distachyon	67.61	8.00e-87	313.00
IUUC-Bol-015641	Brassica oleracea	77.97	3.00e-140	490.00
IUUC-Bra-017983	Brassica rapa	80.86	2.00e-152	530.00
IUUC-Cfa-020683	Canis familiaris	39.71	1.00e-31	129.00
IUUC-Cpo-022145	Cavia porcellus	40.57	9.00e-36	143.00
IUUC-Cre-022810	Chlamydomonas reinhardtii	36.64	4.00e-25	108.00
IUUC-Ete-032583	Echinops telfairi	40.00	5.00e-21	94.70
IUUC-Eeu-034721	Erinaceus europaeus	40.00	4.00e-22	98.20
IUUC-Fca-035679	Felis catus	41.63	2.00e-32	132.00
IUUC-Fal-037148	Ficedula albicollis	40.40	6.00e-34	137.00
IUUC-Gma-043937	Glycine max	82.47	6.00e-114	403.00
IUUC-Hvu-047832	Hordeum vulgare	66.14	1.00e-85	309.00
IUUC-Lch-050553	Latimeria chalumnae	41.38	3.00e-30	125.00
IUUC-Mcc-055600	Macaca mulatta	38.69	1.00e-33	136.00
IUUC-Meu-056459	Macropus eugenii	42.92	2.00e-38	152.00
IUUC-Mtr-058148	Medicago truncatula	80.24	8.00e-114	402.00
IUUC-Mmu-063258	Mus musculus	39.01	5.00e-37	147.00
IUUC-Mpu-066389	Mustela putorius furo	40.38	1.00e-30	126.00
IUUC-Nle-069655	Nomascus leucogenys	38.32	5.00e-34	137.00
IUUC-Opu-083655	Oryza punctata	63.36	1.00e-80	292.00
IUUC-Pan-092009	Papio anubis	38.27	9.00e-33	133.00
IUUC-Psi-093477	Pelodiscus sinensis	40.89	1.00e-28	120.00
IUUC-Pop-099642	Populus trichocarpa	81.82	3.00e-107	380.00
IUUC-Pgr-103618	Puccinia graminis	39.03	1.00e-28	119.00
IUUC-Ptt-103717	Puccinia triticina	48.18	6.00e-27	114.00
IUUC-Rno-104844	Rattus norvegicus	39.15	3.00e-36	145.00
IUUC-Sha-107073	Sarcophilus harrisii	39.75	1.00e-30	126.00
IUUC-Sit-110235	Setaria italica	67.19	7.00e-82	296.00
IUUC-Sly-111609	Solanum lycopersicum	76.89	1.00e-100	358.00
IUUC-Sar-112925	Sorex araneus	40.34	5.00e-29	121.00
IUUC-Sre-114894	Sporisorium reilianum	56.67	2.00e-13	69.30
IUUC-Tru-117920	Takifugu rubripes	42.91	3.00e-44	171.00
IUUC-Tsy-118836	Tarsius syrichta	45.71	2.00e-18	86.30
IUUC-Tae-125207	Triticum aestivum	65.99	6.00e-85	306.00
IUUC-Tur-126610	Triticum urartu	65.99	7.00e-84	304.00
IUUC-Tbe-127493	Tupaia belangeri	46.67	2.00e-19	89.40
IUUC-Uma-129484	Ustilago maydis	53.45	8.00e-12	64.30
IUUC-Vvi-130842	Vitis vinifera	85.71	2.00e-111	394.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence