iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d005732	Zm00001d005732_T001	Zm00001d005732_T001
Zm00001d005732	Zm00001d005732_T003	Zm00001d005732_T003
Zm00001d005732	Zm00001d005732_T004	Zm00001d005732_T004
Zm00001d005732	Zm00001d005732_T002	Zm00001d005732_T002
Zm00001d005732	Zm00001d005732_T005	Zm00001d005732_T005

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	1.10e-17	65.5	205	246
ULD/UDP/UBQ/UBQ_PIM	8.30e-21	75.7	1	76

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 3    dedkleqlveMG...FdreealqaLraannnleaAveyLldg 41
           +e  ++ + eMG   +dr+++l+aLr a+nn+e+AveyL++g
   Q: 205  LEGTIQSILEMGggiWDRDTVLRALRVAYNNPERAVEYLYSG 246
           57789*********99***********************986 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkk 73
           mk+ vktlkg+ f++ev++ d+v+++K+ i+  +    +p++qq LI++Gk+L+DdttL+e+++ +++++++++++
   Q: 1    MKVSVKTLKGSSFQIEVEPTDKVAAVKKVIENMQEqasYPADQQVLIHQGKVLSDDTTLEENQVTENNFLVIMLRQ 76
           99****************************99888889***********************************997 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MKVSVKTLKG SSFQIEVEPT DKVAAVKKVI ENMQEQASYP ADQQVLIHQG KVLSDDTTLE 60
ENQVTENNFL VIMLRQVAYL FVFLLIRQYC IYGCKGYCEF GMSTISSKCY ISYHSTIVTF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCACGGCACA CATCATCCTA GCAAACGTCC TTATCCGGCT ACAACTTTCG CGACGTCTGC 60
GACATCAGAA AACTGAGCTC GCCCCCTCTT GCCTTCCCTC CTCCGCCGGA CCGCTGCTGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0675--Receptor
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000770	Aegilops tauschii	77.69	8.00e-93	333.00
IUUC-Apl-003371	Anas platyrhynchos	35.66	6.00e-27	114.00
IUUC-Ath-006676	Arabidopsis thaliana	66.00	2.00e-81	295.00
IUUC-Ame-011107	Astyanax mexicanus	43.30	3.00e-14	72.40
IUUC-Bdi-014253	Brachypodium distachyon	74.40	7.00e-95	340.00
IUUC-Bra-017983	Brassica rapa	65.99	7.00e-82	296.00
IUUC-Cho-024814	Choloepus hoffmanni	38.60	3.00e-17	82.00
IUUC-Fca-035679	Felis catus	34.77	2.00e-26	113.00
IUUC-Fal-037148	Ficedula albicollis	36.43	7.00e-27	114.00
IUUC-Ggr-040116	Gaeumannomyces graminis	47.15	8.00e-20	90.90
IUUC-Hvu-047832	Hordeum vulgare	76.83	2.00e-94	338.00
IUUC-Kpa-049314	Komagataella pastoris	39.74	7.00e-31	127.00
IUUC-Lpe-051087	Leersia perrieri	81.60	5.00e-107	380.00
IUUC-Loc-051748	Lepisosteus oculatus	35.83	4.00e-29	121.00
IUUC-Mlu-067999	Myotis lucifugus	34.92	5.00e-26	111.00
IUUC-Oba-075392	Oryza barthii	77.04	7.00e-102	363.00
IUUC-Ogl-077021	Oryza glaberrima	73.20	8.00e-94	336.00
IUUC-Ogu-078883	Oryza glumaepatula	77.04	5.00e-102	363.00
IUUC-Oin-079817	Oryza indica	76.65	1.00e-101	362.00
IUUC-Olo-080929	Oryza longistaminata	76.65	3.00e-101	361.00
IUUC-Ome-081866	Oryza meridionalis	77.04	5.00e-102	363.00
IUUC-Oni-083092	Oryza nivara	76.65	1.00e-101	362.00
IUUC-Opu-083756	Oryza punctata	78.66	2.00e-105	375.00
IUUC-Oru-084816	Oryza rufipogon	76.65	1.00e-101	362.00
IUUC-Osa-086112	Oryza sativa	76.65	1.00e-101	362.00
IUUC-Psi-093477	Pelodiscus sinensis	35.20	2.00e-19	89.70
IUUC-Pno-095064	Phaeosphaeria nodorum	36.88	7.00e-13	67.80
IUUC-Pgr-103618	Puccinia graminis	34.78	4.00e-24	105.00
IUUC-Sce-106214	Saccharomyces cerevisiae	33.33	3.00e-12	65.50
IUUC-Sit-110694	Setaria italica	86.89	6.00e-77	281.00
IUUC-Sar-112925	Sorex araneus	35.27	5.00e-23	101.00
IUUC-Sbi-113871	Sorghum bicolor	86.85	4.00e-121	427.00
IUUC-Sre-114894	Sporisorium reilianum	53.70	1.00e-11	63.50
IUUC-Tgu-116918	Taeniopygia guttata	37.15	6.00e-27	114.00
IUUC-Tru-117920	Takifugu rubripes	39.57	8.00e-38	150.00
IUUC-Tsy-118836	Tarsius syrichta	38.60	1.00e-16	80.10
IUUC-Tni-120493	Tetraodon nigroviridis	37.87	9.00e-36	143.00
IUUC-Tre-121911	Trichoderma reesei	37.34	2.00e-25	109.00
IUUC-Tvi-122617	Trichoderma virens	37.39	9.00e-26	110.00
IUUC-Tae-125207	Triticum aestivum	78.10	2.00e-94	338.00
IUUC-Tur-126610	Triticum urartu	77.69	2.00e-93	336.00
IUUC-Tbe-127493	Tupaia belangeri	38.60	6.00e-17	81.30
IUUC-Uma-129484	Ustilago maydis	48.39	2.00e-11	63.50

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence