iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099866

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

PIGMENT DEFECTIVE EMBRYO 323 family protein

Genbank Nucleotide ID

CM000342

Gene Name

POPTRDRAFT_560337; POPTR_0006s03230g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0006s03230	POPTR_0006s03230.1	POPTR_0006s03230.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	1.30e-111	374.2	328	927

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 2    GlkNlgNtCYmNSvLQcLsnipelrelllekkkeklneenpkepkgellkslqklfeelwkskkkavsprellkalkkeaeefsgyeqqDa 92
           Gl+NlgNtC+mNS++QcL++++e+++++ e +++++n++np ++ gel+ ++ +l++ lw   ++a++pr+++ +l+++a++fsgy+q+D+
   Q: 328  GLQNLGNTCFMNSAIQCLVHTSEFAKYFREDYHQEINWQNPLGMVGELALAFGELLRRLWAPGRTAIAPRQFKMKLARFAPQFSGYNQHDS 418
           9****************************************************************************************** PP
   S: 93   qEflaflldqleeelkkeknkpkeeeeeed...kselsdeaeekkkkknkslisdlFqgqlksqikclecdnvssreepfldlslpvpgke 180
           qE+laflld+l+e+l++ k+kp+++++++d   ++e  de + ++  +n+s+i+d+ qgq+ks+++c+ec+++s++++pf++lslp+++ +
   Q: 419  QELLAFLLDGLHEDLNRVKHKPYKKSKDADgrpDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPECHKISVTFDPFMYLSLPLQSTT 509
           ***********************999988822244555669************************************************** PP
   S: 181  etkke...................................................................................... 185
           +++++                                                                                      
   Q: 510  TRSMTvtiftcdgsalpfsctvtvpkqgrcrdlinalssacslknnedlklaevrnhlfqrfledplislsmikdddhlvaykipkslkkt 600
           99888************************************************************************************** PP
   S: 186  ........................................................................................... 185
                                                                                                      
   Q: 601  llirlihrrqeqemgatqaaqhwkpfgtplvslisrdevitrgdiqtvvntmlspllrseslrqadtsepflslaasekrrdsssgeacsn 691
           ******************************************************************************************* PP
   S: 186  .........................................................................................sl 187
                                                                                                    sl
   Q: 692  smsdsvnkdgnavtlfklplqlveesnacvdlsvgedkaiklsststsvlvyvdwsrellekydthylenlpevfkygpvnkkarteplSL 782
           ******************************************************************************************* PP
   S: 188  qdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksrekinkkvefple.Ldlspfctspeekqkekkk 277
             cLe+f +ee l  e+++yc+kck++++a+kkl+l++lPevL++hLkRfsfs+  ++++k+++ v+fp++ +dl+++ ++++++q  ++ 
   Q: 783  YTCLEAFLREEPLVPEDMWYCPKCKERRQASKKLDLWRLPEVLVIHLKRFSFSR--SMKHKLETFVNFPIHdFDLTKYIANKNNTQ--RQL 869
           **************************************************9987..6999*********************99888..9** PP
   S: 278  YeLiavvvHsGslssGHYvayvkn.ekgkWllfdDskVtevkeeevleetgstaYvlfYkr 337
           YeL+a  +H+G+++sGHY+a++k  ++++W++fdD+++++++ee+v++   + aYvlfY+r
   Q: 870  YELYALTNHYGGMGSGHYTAHIKLlDENRWYNFDDTHISPINEEDVKS---AAAYVLFYRR 927
           ***********************945556*******************...********98 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MKELTVECNN SCGGPQRTPE EERVLIRDIA ITSENNSKEG DSFYLITQRW WQHWIDYVNQ 60
EQTNVTNDGS SMLENCDAVS SSRRPASIDN SDLIHDANSE ESNVGFEIHD TLLEGRDYIL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AACCCATTTA CAAGTTTTCT AACAAACTTC AAAATGACAT TACATTAAAA CCCCTTGATA 60
TTTTTCTCAC TCTCTGTTTG GTTACCGAGA AAACAAAAAC AAAAACCAGG GAAACCAAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR006615--Pept_C19_DUSP
IPR001394--Peptidase_C19_UCH
IPR029071--Ubiquitin-rel_dom
IPR018200--USP_CS
IPR028889--USP_dom

PROSITE

PS51283--DUSP
PS00972--USP_1
PS00973--USP_2
PS50235--USP_3

Pfam

PF06337--DUSP
PF00443--UCH

SMART

SM00695--DUSP

Gene Ontology

GO:0004843--F:thiol-dependent ubiquitin-specific protease activity
GO:0016579--P:protein deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0006s03230g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002675	Amborella trichopoda	66.63	0.00e+00	1190.00
IUUC-Aly-005644	Arabidopsis lyrata	69.02	0.00e+00	1231.00
IUUC-Ath-006782	Arabidopsis thaliana	68.34	0.00e+00	1221.00
IUUC-Bdi-014523	Brachypodium distachyon	62.11	0.00e+00	1170.00
IUUC-Bol-016335	Brassica oleracea	66.92	0.00e+00	1231.00
IUUC-Bra-016930	Brassica rapa	66.70	0.00e+00	1230.00
IUUC-Cel-018257	Caenorhabditis elegans	38.91	7.00e-57	215.00
IUUC-Cja-018798	Callithrix jacchus	35.16	1.00e-133	470.00
IUUC-Cin-025292	Ciona intestinalis	33.30	9.00e-132	464.00
IUUC-Csv-026109	Ciona savignyi	36.06	2.00e-90	327.00
IUUC-Dre-027869	Danio rerio	37.13	7.00e-104	371.00
IUUC-Gma-043037	Glycine max	75.08	0.00e+00	1371.00
IUUC-Kpa-049332	Komagataella pastoris	41.47	1.00e-60	228.00
IUUC-Lpe-050892	Leersia perrieri	59.35	0.00e+00	1091.00
IUUC-Mtr-058563	Medicago truncatula	71.08	0.00e+00	1354.00
IUUC-Mac-065239	Musa acuminata	66.10	0.00e+00	1234.00
IUUC-Ont-071847	Oreochromis niloticus	32.59	2.00e-119	423.00
IUUC-Oba-074976	Oryza barthii	59.68	0.00e+00	1109.00
IUUC-Obr-076301	Oryza brachyantha	61.42	0.00e+00	1117.00
IUUC-Ogu-078386	Oryza glumaepatula	59.58	0.00e+00	1109.00
IUUC-Oin-080145	Oryza indica	61.57	0.00e+00	1142.00
IUUC-Olo-080452	Oryza longistaminata	59.49	0.00e+00	1107.00
IUUC-Ome-081929	Oryza meridionalis	61.33	0.00e+00	1076.00
IUUC-Oni-083100	Oryza nivara	55.34	0.00e+00	998.00
IUUC-Opu-083518	Oryza punctata	61.18	0.00e+00	1112.00
IUUC-Oru-084337	Oryza rufipogon	61.25	0.00e+00	1121.00
IUUC-Olu-087717	Ostreococcus lucimarinus	39.23	9.00e-123	433.00
IUUC-Pca-100161	Procavia capensis	39.22	2.00e-82	300.00
IUUC-Ppe-101550	Prunus persica	75.27	0.00e+00	1422.00
IUUC-Sit-110601	Setaria italica	56.24	0.00e+00	868.00
IUUC-Sly-111726	Solanum lycopersicum	71.61	0.00e+00	1291.00
IUUC-Tca-121726	Theobroma cacao	76.44	0.00e+00	1359.00
IUUC-Tae-125515	Triticum aestivum	59.98	0.00e+00	1121.00
IUUC-Tur-126392	Triticum urartu	58.30	0.00e+00	1063.00
IUUC-Tbe-127672	Tupaia belangeri	38.32	4.00e-92	332.00
IUUC-Ttr-128778	Tursiops truncatus	34.17	9.00e-133	467.00
IUUC-Vpa-130571	Vicugna pacos	37.00	7.00e-94	337.00
IUUC-Vvi-131005	Vitis vinifera	76.08	0.00e+00	1422.00
IUUC-Xtr-132305	Xenopus tropicalis	36.90	4.00e-149	521.00
IUUC-Xma-133838	Xiphophorus maculatus	34.88	9.00e-131	460.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence