iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Kpa-049329

Ensembl Protein ID

CAY69300

UniProt Accession

C4R1C6; C4R1C6_KOMPG

Genbank Protein ID

CAY69300.1

Protein Name

Nucleolar protein, component of the small subunit (SSU) processome

Genbank Nucleotide ID

FN392320

Gene Name

PAS_chr2-1_0655

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PAS_chr2-1_0655	CAY69300	CAY69300

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.80e-06	26.2	262	291

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 5    svtclaf.sd.tllvsGsdDgtikvWDlrt 32
           +v++la   + ++++++s D t+k+WD+rt
   Q: 262  PVRALAVnREgNYMAVASSDRTVKIWDIRT 291
           788899986679***************987 PP

Organism

Komagataella pastoris

Protein Sequence
(Fasta)

MSVEGTRNVG SSSLDTTGKP KYGRNKQLGA KLKRYGRERK EALEAARRTD ILLQEEPGFL 60
EPENEMEKTY EITQKDLREN VDIGTAAKGF ELKLKDYGPY SIDYSRNGRE LLIVGKKGHV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAGTGTTG AAGGAACTAG GAATGTGGGC TCCTCTAGTT TGGATACCAC AGGAAAACCT 60
AAATACGGGA GAAACAAACA ACTTGGTGCC AAACTGAAAC GTTATGGGAG GGAACGTAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR012952--BING4_C_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08149--BING4CT

SMART

SM01033--BING4CT
SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0030688--C:preribosome, small subunit precursor
GO:0032040--C:small-subunit processome
GO:0000480--P:endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000447--P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472--P:endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

ppa:PAS_chr2-1_0655

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000921	Aegilops tauschii	44.22	7.00e-95	338.00
IUUC-Atr-002528	Amborella trichopoda	41.90	9.00e-94	335.00
IUUC-Aly-005663	Arabidopsis lyrata	40.85	2.00e-91	327.00
IUUC-Ath-007405	Arabidopsis thaliana	41.10	4.00e-92	329.00
IUUC-Ang-009764	Aspergillus niger	46.40	3.00e-135	473.00
IUUC-Ame-011572	Astyanax mexicanus	48.55	2.00e-100	357.00
IUUC-Bdi-014459	Brachypodium distachyon	44.55	8.00e-96	342.00
IUUC-Bol-015965	Brassica oleracea	41.81	1.00e-91	328.00
IUUC-Bra-016837	Brassica rapa	41.46	8.00e-91	325.00
IUUC-Cel-018465	Caenorhabditis elegans	41.73	3.00e-101	360.00
IUUC-Cre-022704	Chlamydomonas reinhardtii	40.69	2.00e-107	380.00
IUUC-Cgl-026438	Colletotrichum gloeosporioides	48.50	2.00e-142	496.00
IUUC-Cne-026784	Cryptococcus neoformans	45.33	2.00e-90	324.00
IUUC-Dre-028533	Danio rerio	46.49	5.00e-93	332.00
IUUC-Dse-031280	Dothistroma septosporum	45.15	1.00e-131	461.00
IUUC-Eeu-034982	Erinaceus europaeus	45.92	5.00e-57	213.00
IUUC-Fox-037980	Fusarium oxysporum	47.62	1.00e-139	487.00
IUUC-Fso-038154	Fusarium solani	49.37	5.00e-140	489.00
IUUC-Gmo-039548	Gadus morhua	46.51	5.00e-100	356.00
IUUC-Ggr-039976	Gaeumannomyces graminis	48.85	1.00e-136	477.00
IUUC-Gac-042249	Gasterosteus aculeatus	45.83	4.00e-98	349.00
IUUC-Gma-043274	Glycine max	42.20	9.00e-94	335.00
IUUC-Hvu-047436	Hordeum vulgare	47.06	4.00e-74	269.00
IUUC-Lpe-051501	Leersia perrieri	44.08	4.00e-91	329.00
IUUC-Loc-051736	Lepisosteus oculatus	48.50	4.00e-98	349.00
IUUC-Meu-056419	Macropus eugenii	47.93	3.00e-88	317.00
IUUC-Mor-057146	Magnaporthe oryzae	48.30	8.00e-140	488.00
IUUC-Mpo-057512	Magnaporthe poae	47.67	3.00e-138	483.00
IUUC-Mtr-058139	Medicago truncatula	41.58	8.00e-96	342.00
IUUC-Mla-059028	Melampsora laricipopulina	41.43	1.00e-101	361.00
IUUC-Mvi-060533	Microbotryum violaceum	48.43	6.00e-118	416.00
IUUC-Mac-065643	Musa acuminata	43.51	8.00e-94	335.00
IUUC-Ont-071977	Oreochromis niloticus	43.24	2.00e-100	357.00
IUUC-Oba-075525	Oryza barthii	44.11	7.00e-98	348.00
IUUC-Obr-076468	Oryza brachyantha	43.22	8.00e-96	342.00
IUUC-Ogl-077395	Oryza glaberrima	44.11	7.00e-98	348.00
IUUC-Ogu-078730	Oryza glumaepatula	43.86	5.00e-97	346.00
IUUC-Oin-079797	Oryza indica	43.86	2.00e-97	347.00
IUUC-Olo-080539	Oryza longistaminata	43.61	8.00e-97	345.00
IUUC-Oni-082635	Oryza nivara	43.86	2.00e-97	347.00
IUUC-Opu-083733	Oryza punctata	43.86	2.00e-96	343.00
IUUC-Oru-084560	Oryza rufipogon	43.86	2.00e-97	347.00
IUUC-Osa-085463	Oryza sativa	43.86	2.00e-97	347.00
IUUC-Ola-086667	Oryzias latipes	47.66	3.00e-107	380.00
IUUC-Olu-087881	Ostreococcus lucimarinus	45.24	3.00e-103	366.00
IUUC-Pma-094742	Petromyzon marinus	44.19	6.00e-91	325.00
IUUC-Ppa-095230	Physcomitrella patens	45.30	1.00e-110	391.00
IUUC-Pop-099756	Populus trichocarpa	40.45	3.00e-92	330.00
IUUC-Ppe-101354	Prunus persica	40.30	7.00e-89	318.00
IUUC-Pte-104146	Pyrenophora teres	42.86	3.00e-121	426.00
IUUC-Pyt-104559	Pyrenophora triticirepentis	43.16	1.00e-121	427.00
IUUC-Sce-106227	Saccharomyces cerevisiae	50.29	7.00e-156	541.00
IUUC-Sja-107925	Schizosaccharomyces japonicus	49.28	5.00e-142	495.00
IUUC-Spo-108359	Schizosaccharomyces pombe	48.28	2.00e-134	470.00
IUUC-Smo-108706	Selaginella moellendorffii	47.27	2.00e-110	390.00
IUUC-Sit-110158	Setaria italica	43.32	8.00e-91	325.00
IUUC-Sly-111569	Solanum lycopersicum	43.28	1.00e-92	331.00
IUUC-Stu-112403	Solanum tuberosum	42.74	4.00e-92	329.00
IUUC-Sbi-113839	Sorghum bicolor	45.09	8.00e-91	325.00
IUUC-Sre-115150	Sporisorium reilianum	44.15	9.00e-107	378.00
IUUC-Tru-118535	Takifugu rubripes	45.87	4.00e-106	376.00
IUUC-Tca-121165	Theobroma cacao	41.06	5.00e-90	323.00
IUUC-Tre-122114	Trichoderma reesei	50.21	2.00e-140	490.00
IUUC-Tvi-122437	Trichoderma virens	49.69	4.00e-139	485.00
IUUC-Tae-125625	Triticum aestivum	44.47	5.00e-96	342.00
IUUC-Tur-126307	Triticum urartu	44.50	5.00e-93	332.00
IUUC-Tme-127208	Tuber melanosporum	54.10	6.00e-139	485.00
IUUC-Ttr-129047	Tursiops truncatus	45.95	2.00e-99	354.00
IUUC-Uma-129320	Ustilago maydis	44.87	3.00e-109	387.00
IUUC-Vda-129926	Verticillium dahliae	48.30	3.00e-138	483.00
IUUC-Vvi-131643	Vitis vinifera	40.11	1.00e-87	314.00
IUUC-Yli-134674	Yarrowia lipolytica	56.40	4.00e-136	476.00
IUUC-Zma-135903	Zea mays	44.84	1.00e-86	311.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence