iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007598

UUCD1 version

UUC-ArT-00316

Ensembl Protein ID

AT1G60190.1

UniProt Accession

O80742; PUB19_ARATH

Genbank Protein ID

AAC24052.1; AEE33665.1

Protein Name

U-box domain-containing protein 19; Plant U-box protein 19; RING-type E3 ubiquitin transferase PUB19

Genbank Nucleotide ID

AC004473; CP002684

Gene Name

PUB19; At1g60190; T13D8.8

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G60190	AT1G60190.1	AT1G60190.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	4.60e-27	94.8	280	350

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 4    eeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           ++++CpIsle+M+dPvvl+sG+tydrssI kw+asg+ tcP+t+++l ++ lv+n +++++iq++ ++n++
   Q: 280  DDLRCPISLEIMSDPVVLESGHTYDRSSITKWFASGNITCPKTGKTLVSTVLVDNFSVKQVIQSYSKQNGV 350
           689*****************************************************************975 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase.

Protein Sequence
(Fasta)

MIHTPTGSSR RILTFPAVNP CESISLTTLV DSLLQLAGEI LSFKPKHFST NKRSVKETLR 60
HVQTLVIFFE ELRIQIRVGS IPAGRSVILS LSELHVIFQK LKFLLDDCTR DGAKLYMLMN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGCAAACTTG TAGAACGTTG AAACCCCCCA CTCACACGAA GTGTATATAT CCTCTTCACA 60
ACACAAACAT AAACATTACT TCAAACAAAG ACTTGAAAGA ACTATCTTTG TTTTCACTCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity
GO:0010029--P:regulation of seed germination

KEGG

ath:AT1G60190

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000617	Aegilops tauschii	34.33	2.00e-73	269.00
IUUC-Atr-002640	Amborella trichopoda	33.38	2.00e-92	332.00
IUUC-Aly-006337	Arabidopsis lyrata	93.00	0.00e+00	1263.00
IUUC-Bdi-014095	Brachypodium distachyon	34.84	2.00e-93	335.00
IUUC-Bol-015352	Brassica oleracea	76.86	0.00e+00	1000.00
IUUC-Bra-017018	Brassica rapa	77.45	0.00e+00	979.00
IUUC-Gma-043325	Glycine max	44.44	2.00e-137	482.00
IUUC-Hvu-047204	Hordeum vulgare	36.46	4.00e-107	381.00
IUUC-Mtr-058256	Medicago truncatula	44.64	9.00e-145	506.00
IUUC-Mac-064527	Musa acuminata	39.04	4.00e-59	221.00
IUUC-Opu-083981	Oryza punctata	35.84	5.00e-95	341.00
IUUC-Pop-099290	Populus trichocarpa	40.67	4.00e-147	514.00
IUUC-Ppe-102097	Prunus persica	42.18	6.00e-139	487.00
IUUC-Sit-110113	Setaria italica	36.09	4.00e-108	385.00
IUUC-Stu-112861	Solanum tuberosum	39.77	2.00e-144	505.00
IUUC-Sbi-114188	Sorghum bicolor	34.73	1.00e-95	343.00
IUUC-Tae-123313	Triticum aestivum	35.24	3.00e-103	369.00
IUUC-Tur-126514	Triticum urartu	34.08	1.00e-82	300.00
IUUC-Uma-129520	Ustilago maydis	36.36	4.00e-06	44.70
IUUC-Vvi-131344	Vitis vinifera	44.60	2.00e-155	542.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence