iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh2_kg.7__2210__AT4G21100.1	fgenesh2_kg.7__2210__AT4G21100.1	fgenesh2_kg.7__2210__AT4G21100.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DDB1	0	1699.6	735	1088

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DDB1

   S: 783  lseleenevnfllvlDkntfelllaqdlrewEtavsllSqklkdDseeyyvvktalvlpeenelkkgrilvfsve 857
             ++ee+e++f+++lD+++fe+l++++l+++E+++s+lS++++dD+++yy+v+ta+vlpeene++kgrilvf+ve
   Q: 735  QPSAEESEMHFVRLLDAQSFEFLSTYPLDAFEYGCSILSCSFTDDKNVYYCVGTAYVLPEENEPTKGRILVFIVE 809
           56789********************************************************************** PP
   S: 858  dslklkLltvaekkvkgavidlvklNgkllaainseirlyewkvmgtdekelrkeCernntilaLtlktrkdfiv 932
           ++   +L+ ++ek++kgav++l+++Ngkllaain++i+ly+w++++++++el++eC+++++ilaL+++tr+dfiv
   Q: 810  EG---RLQLITEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIV 881
           **...********************************************************************** PP
   S: 933  VgDlmrsvtLllykdlegsfeEsardynlewmsaveilnddiflgaencgNlfvvkkdikagltdeerslleevg 1007
           VgDlm+s++Ll+yk++eg++eE+ardyn++wm aveil+ddi+lga+nc+Nlf+vkk+ ++g+tdeer+++e+vg
   Q: 882  VGDLMKSISLLIYKHEEGAIEERARDYNANWMAAVEILDDDIYLGADNCFNLFTVKKN-NEGATDEERARMEVVG 955
           **********************************************************.**************** PP
   S: 1008 efrlgefvevfrfgtlvlqdvgerevnrssevifgtengeigvilrlrrellkflrnlestlkkvikrvakieHs 1082
           e+++gefv++fr+g+lv++ + ++e++++++vifgt++g+igvi++l++e+++fl++l+++l+kvik+v++++H+
   Q: 956  EYHIGEFVNRFRHGSLVMRLP-DSEIGQIPTVIFGTVSGMIGVIASLPQEQYAFLEKLQTSLRKVIKGVGGLSHE 1029
           *******************98.***************************************************** PP
   S: 1083 syRsFetekrterasgfvdgdLiesilDlsrdkavdilkvlyekrwnskkevsveeivKlveelkrlh 1150
           ++RsF++ekrt++a+ ++dgdLies+lDlsr k+++i+k++         +v+vee++K+veel+rlh
   Q: 1030 QWRSFNNEKRTAEAKSYLDGDLIESFLDLSRGKMEEISKGM---------DVQVEELCKRVEELTRLH 1088
           *****************************************.........9***************98 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MSVWNYAVTA QKPTCVTHSC VGNFTSPQEL NLIVAKSTRI EIHLLSPQGL QTILDVPLYG 60
RIATLELFRP HGEAQDFLFV ATERYKFCVL QWDYESSELI TRAMGDVSDR IGRPTDNGQI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGTTTAAATC TCAAAGAGAA CCCAGAAGCT TCTTATAAAA GAGGCGGGAA ATTTCTCACG 60
CGTGTTGCAT AGAAAATCGA AAACCCTAGT TTTTCTGGGC CAAGAAGAAA ATGAGCGTAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR004871--Cleavage/polyA-sp_fac_asu_C
IPR031297--DDB1
IPR011047--Quinoprotein_ADH-like_supfam
IPR015943--WD40/YVTN_repeat-like_dom

Pfam

PF03178--CPSF_A

Gene Ontology

GO:0005634--C:nucleus
GO:0003676--F:nucleic acid binding
GO:0006281--P:DNA repair
GO:0009793--P:embryo development ending in seed dormancy

KEGG

aly:ARALYDRAFT_492777

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-007151	Arabidopsis thaliana	97.61	0.00e+00	2166.00
IUUC-Bgr-012164	Blumeria graminis	29.18	3.00e-119	422.00
IUUC-Fso-038292	Fusarium solani	27.94	1.00e-116	414.00
IUUC-Pgr-103659	Puccinia graminis	25.23	4.00e-70	259.00
IUUC-Ptt-103884	Puccinia triticina	23.29	5.00e-61	229.00
IUUC-Spo-108029	Schizosaccharomyces pombe	26.93	5.00e-120	425.00
IUUC-Sre-114936	Sporisorium reilianum	24.77	2.00e-67	250.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence