iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh2_kg.6__3199__AT4G12620.1	fgenesh2_kg.6__3199__AT4G12620.1	fgenesh2_kg.6__3199__AT4G12620.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	1.50e-08	35.4	171	215

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 4    ClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           C +C++++ +   ++eC++C   fH +Clk++  +e+p+ + wiC+ C+
   Q: 171  CQICFKSDTN--IMIECDDCLGGFHLKCLKPP-LKEVPEGD-WICQFCE 215
           9*****9996..5*******************.*******7.******7 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MASTPRAKTF KSPTKTPTNI YRKSYLSPSS TSLTPQTPET LTPLRRSARH VSRKIDLGND 60
PIDVPGRESI EEMNLIRKRE RAPRKPTTDV VPEKSTKSET PKKKKKIDSE VSFSPVSPIR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTTCGA CTCCAAGAGC AAAAACCTTC AAATCCCCAA CCAAAACACC GACTAACATC 60
TATCGCAAAT CGTATCTATC ACCATCTTCA ACCTCACTCA CTCCTCAAAC CCCAGAAACT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR003593--AAA+_ATPase
IPR003959--ATPase_AAA_core
IPR001025--BAH_dom
IPR027417--P-loop_NTPase
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51038--BAH
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF00004--AAA
PF01426--BAH
PF00628--PHD

SMART

SM00382--AAA
SM00439--BAH
SM00249--PHD

Gene Ontology

GO:0005524--F:ATP binding
GO:0003682--F:chromatin binding
GO:0010385--F:double-stranded methylated DNA binding
GO:0008270--F:zinc ion binding
GO:0009567--P:double fertilization forming a zygote and endosperm
GO:0006355--P:regulation of transcription, DNA-templated

KEGG

aly:ARALYDRAFT_490065

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002930	Amborella trichopoda	67.06	0.00e+00	858.00
IUUC-Ath-006910	Arabidopsis thaliana	94.38	0.00e+00	1387.00
IUUC-Bol-016257	Brassica oleracea	78.54	0.00e+00	1204.00
IUUC-Bra-017118	Brassica rapa	79.93	0.00e+00	1209.00
IUUC-Cel-018523	Caenorhabditis elegans	49.02	3.00e-11	63.90
IUUC-Cre-022831	Chlamydomonas reinhardtii	39.37	1.00e-42	167.00
IUUC-Gmo-039354	Gadus morhua	42.86	2.00e-09	58.50
IUUC-Gma-043474	Glycine max	61.31	0.00e+00	1016.00
IUUC-Hvu-047826	Hordeum vulgare	62.40	0.00e+00	703.00
IUUC-Kpa-049245	Komagataella pastoris	33.73	1.00e-06	48.90
IUUC-Lpe-051030	Leersia perrieri	63.07	0.00e+00	827.00
IUUC-Mtr-058324	Medicago truncatula	61.23	0.00e+00	972.00
IUUC-Mac-065599	Musa acuminata	63.77	0.00e+00	935.00
IUUC-Oba-075586	Oryza barthii	63.33	0.00e+00	803.00
IUUC-Obr-076569	Oryza brachyantha	63.85	0.00e+00	825.00
IUUC-Ogl-077597	Oryza glaberrima	63.98	0.00e+00	837.00
IUUC-Ogu-078194	Oryza glumaepatula	63.97	0.00e+00	810.00
IUUC-Olo-080478	Oryza longistaminata	62.81	0.00e+00	833.00
IUUC-Ome-081900	Oryza meridionalis	64.17	0.00e+00	836.00
IUUC-Oni-082028	Oryza nivara	57.39	0.00e+00	675.00
IUUC-Oru-085084	Oryza rufipogon	64.39	0.00e+00	810.00
IUUC-Ppa-095664	Physcomitrella patens	55.43	3.00e-130	459.00
IUUC-Pop-099691	Populus trichocarpa	64.33	0.00e+00	1028.00
IUUC-Ppe-102108	Prunus persica	68.82	0.00e+00	980.00
IUUC-Smo-109166	Selaginella moellendorffii	52.00	0.00e+00	662.00
IUUC-Sit-110797	Setaria italica	63.79	0.00e+00	841.00
IUUC-Tca-121730	Theobroma cacao	68.65	0.00e+00	990.00
IUUC-Tae-122781	Triticum aestivum	63.26	0.00e+00	834.00
IUUC-Vvi-130915	Vitis vinifera	70.93	0.00e+00	906.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence