iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sbi-114104

Ensembl Protein ID

Sb03g000410.1

UniProt Accession

C5XJI5; C5XJI5_SORBI

Genbank Protein ID

EES02165.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000762

Gene Name

SORBI_003G002700

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb03g000410	Sb03g000410.1	Sb03g000410.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.10e-25	89.3	334	360

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 5    svtclaf.sd.tllvsGsdDgtikvWD 29
           +v+c+++  d t+lvsGsdD ++++W 
   Q: 334  RVFCVKYtYDgTYLVSGSDDTNLRLWK 360
           69*****9556***************8 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MRVKVISRST DEFTRERSQD LQKVFRNYDP ALRSQEKAVE YTRALNAAKL EKIFAKPFIG 60
AMNGHIDAVS CMAKNPNHLK AIFSGSMDGD IRLWDIAARK TVCQFPGHQG AVRGLTTSTE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAAAAAAGC GCTTCGTCTC TCTGTCTGCT GTTCTGCTCT CCTTCCTTCC CCTCGGCGGC 60
GCGGGCGGCG AGGGTTTGGA AGCGTGCGGT GAGCGGCGCA AGACCCTAGC CCCTCGGCGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR007287--Sof1
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04158--Sof1
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005730--C:nucleolus
GO:0032040--C:small-subunit processome
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

sbi:SORBI_03g000410

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002799	Amborella trichopoda	74.12	0.00e+00	712.00
IUUC-Aly-005998	Arabidopsis lyrata	71.90	0.00e+00	713.00
IUUC-Ath-007526	Arabidopsis thaliana	71.68	0.00e+00	709.00
IUUC-Bdi-014343	Brachypodium distachyon	91.15	0.00e+00	845.00
IUUC-Bol-015740	Brassica oleracea	69.91	0.00e+00	664.00
IUUC-Bra-016689	Brassica rapa	69.69	0.00e+00	660.00
IUUC-Cre-022798	Chlamydomonas reinhardtii	66.26	9.00e-64	234.00
IUUC-Cne-026840	Cryptococcus neoformans	36.20	4.00e-79	289.00
IUUC-Ggr-039816	Gaeumannomyces graminis	40.70	3.00e-93	334.00
IUUC-Gma-043073	Glycine max	73.89	0.00e+00	727.00
IUUC-Hvu-047654	Hordeum vulgare	84.35	2.00e-146	510.00
IUUC-Lpe-051622	Leersia perrieri	92.26	0.00e+00	861.00
IUUC-Mpo-057530	Magnaporthe poae	40.93	9.00e-94	336.00
IUUC-Mtr-058187	Medicago truncatula	71.90	0.00e+00	694.00
IUUC-Mvi-060370	Microbotryum violaceum	41.76	1.00e-70	259.00
IUUC-Mac-065129	Musa acuminata	82.52	0.00e+00	811.00
IUUC-Oba-075161	Oryza barthii	93.36	0.00e+00	868.00
IUUC-Obr-076868	Oryza brachyantha	92.70	0.00e+00	864.00
IUUC-Ogl-077062	Oryza glaberrima	93.36	0.00e+00	868.00
IUUC-Ogu-078308	Oryza glumaepatula	93.58	0.00e+00	870.00
IUUC-Oin-079378	Oryza indica	93.58	0.00e+00	870.00
IUUC-Olo-080638	Oryza longistaminata	89.82	0.00e+00	819.00
IUUC-Oni-082368	Oryza nivara	93.58	0.00e+00	870.00
IUUC-Opu-083628	Oryza punctata	93.58	0.00e+00	870.00
IUUC-Oru-085226	Oryza rufipogon	93.36	0.00e+00	868.00
IUUC-Osa-085368	Oryza sativa	91.67	8.00e-149	518.00
IUUC-Ppa-095514	Physcomitrella patens	63.94	0.00e+00	641.00
IUUC-Pop-099649	Populus trichocarpa	76.55	0.00e+00	750.00
IUUC-Pgr-103469	Puccinia graminis	38.39	2.00e-65	242.00
IUUC-Ptt-103980	Puccinia triticina	38.21	7.00e-64	237.00
IUUC-Sja-107703	Schizosaccharomyces japonicus	43.88	9.00e-102	362.00
IUUC-Spo-108046	Schizosaccharomyces pombe	45.43	5.00e-110	390.00
IUUC-Smo-109548	Selaginella moellendorffii	64.16	0.00e+00	630.00
IUUC-Sit-110242	Setaria italica	97.57	0.00e+00	902.00
IUUC-Sre-114951	Sporisorium reilianum	40.52	2.00e-107	381.00
IUUC-Tca-121222	Theobroma cacao	76.11	0.00e+00	728.00
IUUC-Tae-124591	Triticum aestivum	87.17	0.00e+00	780.00
IUUC-Tur-126098	Triticum urartu	82.58	0.00e+00	738.00
IUUC-Uma-129353	Ustilago maydis	41.15	1.00e-107	382.00
IUUC-Vvi-131555	Vitis vinifera	78.10	0.00e+00	747.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence