iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	2.10e-08	35.4	143	185

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           Ca+Cl++f  kd +++lp C H+fh++C+  w       + + +CPlCr
   Q: 143  CAVCLCEFseKDKLRLLPmCSHAFHLNCIDTW------LQSNSTCPLCR 185
           ********88666*******************......**********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MSWVRFTIEQ KDGNFAYPPP FYKDPILSPP SPPPPSSGNR ISPAVLFVIV ILAVLFFISG 60
LLHLLVRFLI KHPSATASSR SNRFPEISTS DALQRQLQQL FHLNDSGLDQ AFIDALPVFH 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTTGTTGT TTTCCAACTT TTGCCTCGCA CTTCGAAATT TTACAAAATC ACTTTGCTAT 60
TTTCTTCGAG TTTTCTACTT CCACCATTAA AGCTCAAGAA AAGGAAAGGT TATAGCGAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT5G40250

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000392	Aegilops tauschii	57.55	4.00e-59	220.00
IUUC-Atr-002701	Amborella trichopoda	45.40	5.00e-59	221.00
IUUC-Aly-005849	Arabidopsis lyrata	97.07	0.00e+00	676.00
IUUC-Bdi-014382	Brachypodium distachyon	50.36	4.00e-65	241.00
IUUC-Bol-015358	Brassica oleracea	78.16	1.00e-148	518.00
IUUC-Bra-017624	Brassica rapa	81.79	4.00e-145	506.00
IUUC-Gma-043292	Glycine max	57.46	6.00e-80	290.00
IUUC-Hvu-047144	Hordeum vulgare	51.60	6.00e-66	243.00
IUUC-Lpe-051339	Leersia perrieri	48.28	1.00e-69	256.00
IUUC-Mtr-058167	Medicago truncatula	62.89	4.00e-88	317.00
IUUC-Mac-065319	Musa acuminata	50.17	2.00e-54	205.00
IUUC-Oba-075878	Oryza barthii	49.83	1.00e-70	259.00
IUUC-Obr-076120	Oryza brachyantha	49.36	7.00e-73	266.00
IUUC-Ogl-077906	Oryza glaberrima	50.85	9.00e-71	259.00
IUUC-Ogu-078031	Oryza glumaepatula	49.83	1.00e-70	259.00
IUUC-Oin-080065	Oryza indica	50.71	2.00e-67	249.00
IUUC-Olo-080996	Oryza longistaminata	49.83	1.00e-70	259.00
IUUC-Ome-081784	Oryza meridionalis	50.51	2.00e-70	258.00
IUUC-Oni-082697	Oryza nivara	49.83	1.00e-70	259.00
IUUC-Opu-083782	Oryza punctata	50.00	1.00e-69	256.00
IUUC-Oru-084352	Oryza rufipogon	49.83	1.00e-70	259.00
IUUC-Osa-085627	Oryza sativa	49.83	1.00e-70	259.00
IUUC-Pop-099808	Populus trichocarpa	66.77	1.00e-104	372.00
IUUC-Ppe-101995	Prunus persica	60.82	4.00e-92	330.00
IUUC-Sit-109828	Setaria italica	51.98	1.00e-68	253.00
IUUC-Sly-111152	Solanum lycopersicum	58.59	6.00e-85	306.00
IUUC-Stu-112833	Solanum tuberosum	60.00	3.00e-88	318.00
IUUC-Sbi-114772	Sorghum bicolor	51.28	3.00e-73	268.00
IUUC-Tca-121741	Theobroma cacao	67.68	5.00e-117	413.00
IUUC-Tae-124691	Triticum aestivum	51.62	1.00e-65	242.00
IUUC-Vvi-131093	Vitis vinifera	61.73	1.00e-84	305.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence