iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007338

UUCD1 version

UUC-ArT-00474

Ensembl Protein ID

AT4G33940.1

UniProt Accession

Q501G9; Q501G9_ARATH

Genbank Protein ID

AAY25410.1; ABD19673.1; AEE86297.1

Protein Name

At4g33940; RING/U-box superfamily protein

Genbank Nucleotide ID

BT021998; BT024492; CP002687

Gene Name

At4g33940; F17I5.1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT4G33940	AT4G33940.1	AT4G33940.1
AT4G33940	AT4G33940.2	AT4G33940.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
HINT
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	26.53	4.00e-13	71.60	IUUC-Cel-018593

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MSSLGSSKSL RDEMEVTTAD VFPEVNAAAV TENLDRNELV LADGVVSAEE RNIEPDNRGE 60
RKIESESPPE DDVCPICFGS FTVPCRGNCG HWYCGNCILQ YWNYAAISRP CKCPMCVRHI 120

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Nucleotide Sequence
(Fasta)

CTCATTTCTG TAAATTAGGA AACTTCTGAG AAAGTGACGA AAGCGAAGAA GGTTTCGGAA 60
GTAAATATGT CTTCCTTGGG GAGCAGCAAA TCCCTGAGGG ATGAGATGGA GGTAACAACC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00097--zf-C3HC4

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0008270--F:zinc ion binding
GO:0010200--P:response to chitin

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Bra-016782	Brassica rapa	79.01	7.00e-114	402.00
IUUC-Cel-018593	Caenorhabditis elegans	27.47	3.00e-14	71.60
IUUC-Cho-024304	Choloepus hoffmanni	31.36	1.00e-13	69.30
IUUC-Pop-099622	Populus trichocarpa	54.92	1.00e-59	221.00
IUUC-Sly-111612	Solanum lycopersicum	48.00	6.00e-58	216.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence