iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Dre-027802

Ensembl Protein ID

ENSDARP00000128370.1

UniProt Accession

X1WDS1; X1WDS1_DANRE

Genbank Protein ID

ENSDARP00000128370

Protein Name

PHD finger protein 12b

Genbank Nucleotide ID

CR457447

Gene Name

phf12b

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSDARG00000075509.4	ENSDART00000155900.1	ENSDARP00000128370.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	4.60e-09	37.2	279	324

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpk 50
           kvC  Cg++ +    l++C+ C   fH +Cl ++  + +p+   w+Cp+
   Q: 279  KVCFTCGKSCRVA-PLIQCDYCALLFHMDCLDPP-LTAMPTGR-WMCPN 324
           5788888888866.7*******************.*******6.***96 PP

Organism

Danio rerio

Protein Sequence
(Fasta)

MWDKMETPKI LYDLDTSGGL MEQIQQLLAP PRSEDGEKRR KPERETRRGG RATNHDTCDS 60
CREGGDLLCC DHCPAAFHLQ CCNPPLSREM LPPGDWMCHR CSVRKKKREQ KAEQVNGALE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTGTTCTTCA CAAAGCTTTA TGATCCCTTT CTAAAATCCC CCACTGTGCT TCAAAGAGAA 60
AACATGACCT GCAGGCTCGG AGATCTGCTG TTAATCTGGC AAACTAACGC TAGGTGGCAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR000253--FHA_dom
IPR031966--PHF12_MRG-bd
IPR008984--SMAD_FHA_domain
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50006--FHA_DOMAIN
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF00628--PHD
PF16737--PHF12_MRG_bd

SMART

SM00249--PHD

Gene Ontology

GO:0008270--F:zinc ion binding

KEGG

dre:325296

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ago-007848	Ashbya gossypii	26.13	6.00e-16	79.30
IUUC-Acl-008313	Aspergillus clavatus	44.83	4.00e-11	63.90
IUUC-Afl-008508	Aspergillus flavus	40.45	3.00e-14	74.30
IUUC-Ang-009553	Aspergillus niger	45.71	8.00e-14	72.80
IUUC-Aor-010143	Aspergillus oryzae	40.45	2.00e-14	74.30
IUUC-Cin-025146	Ciona intestinalis	40.08	1.00e-42	169.00
IUUC-Cne-026966	Cryptococcus neoformans	43.10	8.00e-11	62.00
IUUC-Dme-031758	Drosophila melanogaster	35.90	2.00e-68	254.00
IUUC-Gmo-038603	Gadus morhua	48.46	3.00e-176	612.00
IUUC-Lch-050540	Latimeria chalumnae	59.45	0.00e+00	640.00
IUUC-Loc-052037	Lepisosteus oculatus	58.64	0.00e+00	1012.00
IUUC-Mvi-060276	Microbotryum violaceum	43.94	1.00e-11	65.50
IUUC-Ont-072294	Oreochromis niloticus	53.54	0.00e+00	883.00
IUUC-Oga-089177	Otolemur garnettii	59.89	3.00e-177	615.00
IUUC-Sja-107964	Schizosaccharomyces japonicus	44.23	4.00e-11	62.80
IUUC-Xtr-132518	Xenopus tropicalis	53.29	5.00e-151	528.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence