iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d025491	Zm00001d025491_T001	Zm00001d025491_T001
Zm00001d025491	Zm00001d025491_T002	Zm00001d025491_T002

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	1.80e-10	42.8	310	359

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 4    ClvCgeggedek.slveCekCrewfHpaClkls.veeelpnsekwiCpkCrs 53
           C  Cg  ++++    + C++C++w+H +C+ ++ ve +  ++  + Cp C++
   Q: 310  CGTCGGMYSENGvFWIGCDICDKWYHGDCVRITpVEAKHIDQ--YSCPACSN 359
           8888888887767789*****************455554444..******86 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MDRHGSARLA TPEDVFTDFR ARRDGILKAL TTDVEKFYKL CDPEYKDNLC LYGLPNKTWE 60
VNVPAAEIPP ELPEPAEGIN VTRDSMPKED WLSFVAVHSD AWLVAVAFHF GALHGFDKDA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AACTTTCTAT CTGAAGTTCA GTAATTCTCT CGGCAACTCA GCTCCCGCCA GACAATAGCC 60
ACCACCTCCG ACGCCGCGTC CTCGTCCTCT TTCGCTTGAA CCCTAGCCTC GCATCGGCCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR021998--Alfin
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF12165--Alfin
PF00628--PHD

SMART

SM00249--PHD

Gene Ontology

GO:0008270--F:zinc ion binding
GO:0006355--P:regulation of transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001165	Aegilops tauschii	42.17	4.00e-51	194.00
IUUC-Atr-002983	Amborella trichopoda	53.39	3.00e-53	201.00
IUUC-Aly-005868	Arabidopsis lyrata	50.00	5.00e-51	193.00
IUUC-Ath-007447	Arabidopsis thaliana	49.14	5.00e-51	193.00
IUUC-Ang-009560	Aspergillus niger	50.00	3.00e-06	47.00
IUUC-Bdi-014599	Brachypodium distachyon	50.42	3.00e-51	194.00
IUUC-Bol-015206	Brassica oleracea	50.63	4.00e-49	187.00
IUUC-Bra-016659	Brassica rapa	51.05	9.00e-50	189.00
IUUC-Dse-031262	Dothistroma septosporum	48.78	3.00e-07	50.10
IUUC-Gma-043342	Glycine max	52.28	2.00e-52	198.00
IUUC-Hvu-047100	Hordeum vulgare	48.92	4.00e-58	217.00
IUUC-Kpa-049384	Komagataella pastoris	32.08	8.00e-05	41.60
IUUC-Lpe-050738	Leersia perrieri	49.55	3.00e-59	220.00
IUUC-Mtr-057868	Medicago truncatula	48.44	4.00e-50	190.00
IUUC-Mac-064648	Musa acuminata	49.56	4.00e-48	183.00
IUUC-Oba-075021	Oryza barthii	47.41	2.00e-50	192.00
IUUC-Ogl-077422	Oryza glaberrima	50.00	2.00e-52	198.00
IUUC-Ogu-079021	Oryza glumaepatula	47.79	1.00e-50	192.00
IUUC-Oin-079801	Oryza indica	50.00	4.00e-52	197.00
IUUC-Olo-080963	Oryza longistaminata	35.22	1.00e-21	95.90
IUUC-Ome-082006	Oryza meridionalis	62.50	5.00e-38	150.00
IUUC-Oni-082314	Oryza nivara	50.00	4.00e-52	197.00
IUUC-Opu-083864	Oryza punctata	65.62	5.00e-37	147.00
IUUC-Oru-085108	Oryza rufipogon	48.67	8.00e-43	166.00
IUUC-Osa-085794	Oryza sativa	62.50	7.00e-38	150.00
IUUC-Olu-087829	Ostreococcus lucimarinus	56.20	2.00e-31	128.00
IUUC-Ppa-095203	Physcomitrella patens	49.19	3.00e-50	191.00
IUUC-Pop-099708	Populus trichocarpa	52.54	4.00e-54	204.00
IUUC-Ppe-101390	Prunus persica	50.00	1.00e-50	192.00
IUUC-Smo-108937	Selaginella moellendorffii	42.54	4.00e-33	134.00
IUUC-Sit-110822	Setaria italica	64.49	5.00e-38	150.00
IUUC-Sly-111474	Solanum lycopersicum	52.02	2.00e-53	201.00
IUUC-Stu-112184	Solanum tuberosum	52.36	9.00e-51	192.00
IUUC-Tca-121679	Theobroma cacao	51.59	2.00e-52	198.00
IUUC-Tae-125833	Triticum aestivum	49.59	4.00e-51	194.00
IUUC-Vvi-131388	Vitis vinifera	50.82	1.00e-52	199.00
IUUC-Yli-134626	Yarrowia lipolytica	35.19	2.00e-04	40.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence