iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Ssc-116323

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CU457406

Gene Name

SYVN1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSSCG00000027057.1	ENSSSCT00000027683.1	ENSSSCP00000023162.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	2.60e-09	37.8	291	330

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C+iC+e++ +g + lpC+H+fh++Cl  w       +++++CP+Cr
   Q: 291  CIICREEMVTGAKRLPCNHIFHTSCLRSW------FQRQQTCPTCR 330
           ********99999****************......**********8 PP

Organism

Sus scrofa

Protein Sequence
(Fasta)

MFRTAVMMAA SLALTGAVVA HAYYLKHQFY PTVVYLTKSS PSMAVLYIQA FVLVFLLGKV 60
MGKVFFGQLR AAEMEHLLER SWYAVTETCL AFTVFRDDFS PRFVALFTLL LFLKCFHWLA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTTCCGCA CCGCCGTGAT GATGGCGGCC AGCCTGGCGC TGACCGGGGC CGTGGTGGCT 60
CACGCCTACT ACCTCAAGCA CCAGTTCTAC CCCACTGTGG TGTACTTGAC CAAGTCCAGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR032832--E3_lig_synoviolin/Hrd1
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0036513--C:Derlin-1 retrotranslocation complex
GO:0044322--C:endoplasmic reticulum quality control compartment
GO:0000836--C:Hrd1p ubiquitin ligase complex
GO:0000839--C:Hrd1p ubiquitin ligase ERAD-L complex
GO:0016021--C:integral component of membrane
GO:0005654--C:nucleoplasm
GO:0005790--C:smooth endoplasmic reticulum
GO:1904264--F:ubiquitin protein ligase activity involved in ERAD pathway
GO:1990381--F:ubiquitin-specific protease binding
GO:0051082--F:unfolded protein binding
GO:0008270--F:zinc ion binding
GO:0030968--P:endoplasmic reticulum unfolded protein response
GO:1902236--P:negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway
GO:0070936--P:protein K48-linked ubiquitination
GO:0018279--P:protein N-linked glycosylation via asparagine
GO:0000209--P:protein polyubiquitination
GO:0050821--P:protein stabilization
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0030970--P:retrograde protein transport, ER to cytosol
GO:0030433--P:ubiquitin-dependent ERAD pathway

KEGG

ssc:100514334

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000344	Aegilops tauschii	36.99	7.00e-51	194.00
IUUC-Aml-001539	Ailuropoda melanoleuca	99.41	0.00e+00	699.00
IUUC-Atr-002892	Amborella trichopoda	44.18	1.00e-76	280.00
IUUC-Apl-004003	Anas platyrhynchos	94.92	3.00e-64	236.00
IUUC-Aca-004799	Anolis carolinensis	97.50	0.00e+00	655.00
IUUC-Aly-006352	Arabidopsis lyrata	43.88	7.00e-74	271.00
IUUC-Ath-006773	Arabidopsis thaliana	43.88	1.00e-73	270.00
IUUC-Ago-007894	Ashbya gossypii	25.24	3.00e-18	86.70
IUUC-Acl-008041	Aspergillus clavatus	30.79	6.00e-56	212.00
IUUC-Afl-008427	Aspergillus flavus	31.56	1.00e-50	194.00
IUUC-Afu-009023	Aspergillus fumigatus	30.85	4.00e-55	209.00
IUUC-Ani-009133	Aspergillus nidulans	31.75	5.00e-59	222.00
IUUC-Ang-009612	Aspergillus niger	34.59	3.00e-56	213.00
IUUC-Aor-010045	Aspergillus oryzae	31.19	5.00e-57	215.00
IUUC-Ate-010533	Aspergillus terreus	32.08	1.00e-56	214.00
IUUC-Ame-011083	Astyanax mexicanus	93.06	3.00e-180	624.00
IUUC-Bgr-012122	Blumeria graminis	28.77	4.00e-49	189.00
IUUC-Bta-013375	Bos taurus	99.70	0.00e+00	696.00
IUUC-Bci-013675	Botrytis cinerea	37.25	8.00e-24	105.00
IUUC-Bdi-015070	Brachypodium distachyon	42.69	5.00e-69	254.00
IUUC-Bol-015674	Brassica oleracea	43.50	7.00e-75	274.00
IUUC-Bra-017516	Brassica rapa	42.90	7.00e-72	264.00
IUUC-Cel-018422	Caenorhabditis elegans	58.01	9.00e-118	417.00
IUUC-Cja-019779	Callithrix jacchus	97.05	0.00e+00	665.00
IUUC-Cfa-020189	Canis familiaris	99.70	0.00e+00	696.00
IUUC-Cpo-022209	Cavia porcellus	99.41	0.00e+00	697.00
IUUC-Cre-022743	Chlamydomonas reinhardtii	39.56	6.00e-65	240.00
IUUC-Csa-023571	Chlorocebus sabaeus	99.70	0.00e+00	696.00
IUUC-Cho-024889	Choloepus hoffmanni	88.13	3.00e-176	611.00
IUUC-Csv-026160	Ciona savignyi	60.52	3.00e-122	431.00
IUUC-Cne-027002	Cryptococcus neoformans	40.62	5.00e-76	278.00
IUUC-Cme-027285	Cyanidioschyzon merolae	35.77	1.00e-50	194.00
IUUC-Dre-027999	Danio rerio	92.74	0.00e+00	630.00
IUUC-Dno-029250	Dasypus novemcinctus	99.41	0.00e+00	700.00
IUUC-Dor-030718	Dipodomys ordii	94.97	0.00e+00	663.00
IUUC-Dse-031498	Dothistroma septosporum	34.76	2.00e-27	117.00
IUUC-Dme-031969	Drosophila melanogaster	64.69	2.00e-141	495.00
IUUC-Ete-032592	Echinops telfairi	98.46	9.00e-32	130.00
IUUC-Eca-033258	Equus caballus	99.70	0.00e+00	701.00
IUUC-Fca-035980	Felis catus	99.40	0.00e+00	696.00
IUUC-Fal-037554	Ficedula albicollis	68.86	2.00e-99	355.00
IUUC-Fox-037902	Fusarium oxysporum	31.22	2.00e-52	199.00
IUUC-Fso-038418	Fusarium solani	30.71	3.00e-48	186.00
IUUC-Gmo-039288	Gadus morhua	90.24	2.00e-179	621.00
IUUC-Ggr-040076	Gaeumannomyces graminis	31.68	1.00e-50	194.00
IUUC-Gga-040347	Gallus gallus	92.31	4.00e-75	272.00
IUUC-Gac-042347	Gasterosteus aculeatus	92.11	3.00e-179	621.00
IUUC-Gma-043917	Glycine max	44.02	2.00e-73	270.00
IUUC-Ggo-044858	Gorilla gorilla	99.70	0.00e+00	699.00
IUUC-Hsa-046412	Homo sapiens	99.70	0.00e+00	701.00
IUUC-Hvu-047279	Hordeum vulgare	42.69	2.00e-68	252.00
IUUC-Itr-048924	Ictidomys tridecemlineatus	99.70	0.00e+00	695.00
IUUC-Kpa-049117	Komagataella pastoris	29.19	2.00e-31	129.00
IUUC-Lch-049533	Latimeria chalumnae	48.85	3.00e-72	265.00
IUUC-Lpe-051229	Leersia perrieri	32.70	8.00e-35	140.00
IUUC-Loc-052843	Lepisosteus oculatus	93.06	5.00e-121	426.00
IUUC-Lma-052997	Leptosphaeria maculans	33.33	1.00e-60	228.00
IUUC-Laf-053482	Loxodonta africana	99.70	0.00e+00	693.00
IUUC-Mcc-055075	Macaca mulatta	99.70	0.00e+00	701.00
IUUC-Meu-056683	Macropus eugenii	98.10	5.00e-151	527.00
IUUC-Mor-057082	Magnaporthe oryzae	31.34	3.00e-53	203.00
IUUC-Mpo-057573	Magnaporthe poae	31.00	2.00e-50	193.00
IUUC-Mtr-058601	Medicago truncatula	44.48	7.00e-80	291.00
IUUC-Mla-059168	Melampsora laricipopulina	40.95	6.00e-79	288.00
IUUC-Mga-059510	Meleagris gallopavo	97.59	6.00e-46	176.00
IUUC-Mvi-060515	Microbotryum violaceum	39.57	4.00e-66	246.00
IUUC-Mmr-060922	Microcebus murinus	99.70	0.00e+00	697.00
IUUC-Mdo-062491	Monodelphis domestica	98.22	0.00e+00	672.00
IUUC-Mmu-063770	Mus musculus	99.70	0.00e+00	697.00
IUUC-Mac-064789	Musa acuminata	43.28	1.00e-78	286.00
IUUC-Mpu-066107	Mustela putorius furo	99.12	0.00e+00	702.00
IUUC-Mlu-067918	Myotis lucifugus	97.43	0.00e+00	631.00
IUUC-Nfi-068389	Neosartorya fischeri	30.59	1.00e-54	207.00
IUUC-Ncr-068742	Neurospora crassa	31.94	4.00e-49	189.00
IUUC-Nle-069139	Nomascus leucogenys	99.70	0.00e+00	701.00
IUUC-Opr-070898	Ochotona princeps	98.56	4.00e-123	435.00
IUUC-Ont-071991	Oreochromis niloticus	90.77	0.00e+00	635.00
IUUC-Ocu-074065	Oryctolagus cuniculus	98.81	0.00e+00	692.00
IUUC-Oba-075221	Oryza barthii	41.79	4.00e-68	251.00
IUUC-Obr-076914	Oryza brachyantha	43.23	1.00e-64	239.00
IUUC-Ogu-078124	Oryza glumaepatula	41.79	4.00e-68	251.00
IUUC-Oin-080013	Oryza indica	40.12	1.00e-64	240.00
IUUC-Olo-080247	Oryza longistaminata	40.19	6.00e-61	227.00
IUUC-Ome-081769	Oryza meridionalis	42.39	9.00e-71	260.00
IUUC-Oni-082946	Oryza nivara	41.79	3.00e-68	252.00
IUUC-Opu-083268	Oryza punctata	36.13	5.00e-51	195.00
IUUC-Oru-085114	Oryza rufipogon	41.79	4.00e-68	251.00
IUUC-Osa-085829	Oryza sativa	42.39	8.00e-71	260.00
IUUC-Ola-087449	Oryzias latipes	92.38	2.00e-179	622.00
IUUC-Olu-087894	Ostreococcus lucimarinus	42.34	3.00e-74	271.00
IUUC-Oga-089036	Otolemur garnettii	99.70	0.00e+00	695.00
IUUC-Oar-089715	Ovis aries	99.70	0.00e+00	700.00
IUUC-Ptr-091000	Pan troglodytes	99.70	0.00e+00	694.00
IUUC-Pan-092187	Papio anubis	99.70	0.00e+00	700.00
IUUC-Psi-093377	Pelodiscus sinensis	96.75	3.00e-179	621.00
IUUC-Pma-094759	Petromyzon marinus	91.55	3.00e-78	285.00
IUUC-Pno-094883	Phaeosphaeria nodorum	32.89	3.00e-58	219.00
IUUC-Ppa-095684	Physcomitrella patens	44.51	6.00e-71	261.00
IUUC-Pfo-096861	Poecilia formosa	89.91	0.00e+00	629.00
IUUC-Pab-098030	Pongo abelii	99.70	0.00e+00	700.00
IUUC-Pop-099245	Populus trichocarpa	44.44	2.00e-80	292.00
IUUC-Pca-100191	Procavia capensis	95.91	0.00e+00	671.00
IUUC-Ppe-101829	Prunus persica	43.20	2.00e-78	286.00
IUUC-Pva-102689	Pteropus vampyrus	99.41	0.00e+00	701.00
IUUC-Pgr-103286	Puccinia graminis	37.82	2.00e-73	270.00
IUUC-Ptt-103919	Puccinia triticina	38.27	9.00e-72	263.00
IUUC-Pte-104372	Pyrenophora teres	33.75	3.00e-64	239.00
IUUC-Pyt-104456	Pyrenophora triticirepentis	33.50	4.00e-62	232.00
IUUC-Rno-105723	Rattus norvegicus	99.70	0.00e+00	694.00
IUUC-Sce-106348	Saccharomyces cerevisiae	26.25	1.00e-24	107.00
IUUC-Sha-107300	Sarcophilus harrisii	97.39	1.00e-153	536.00
IUUC-Sja-107685	Schizosaccharomyces japonicus	27.79	5.00e-39	155.00
IUUC-Spo-108308	Schizosaccharomyces pombe	29.04	8.00e-39	155.00
IUUC-Ssl-108558	Sclerotinia sclerotiorum	37.25	7.00e-24	105.00
IUUC-Smo-109123	Selaginella moellendorffii	47.00	2.00e-76	279.00
IUUC-Sit-110276	Setaria italica	43.28	8.00e-71	261.00
IUUC-Sly-111819	Solanum lycopersicum	44.22	5.00e-71	261.00
IUUC-Stu-112048	Solanum tuberosum	44.51	2.00e-75	276.00
IUUC-Sbi-114027	Sorghum bicolor	42.69	5.00e-78	284.00
IUUC-Sre-115212	Sporisorium reilianum	37.06	8.00e-64	238.00
IUUC-Tgu-117156	Taeniopygia guttata	94.81	2.00e-39	152.00
IUUC-Tru-118045	Takifugu rubripes	89.55	0.00e+00	630.00
IUUC-Tsy-118823	Tarsius syrichta	86.21	2.00e-158	551.00
IUUC-Tni-120106	Tetraodon nigroviridis	90.12	4.00e-128	451.00
IUUC-Tca-121462	Theobroma cacao	44.97	4.00e-78	285.00
IUUC-Tre-122204	Trichoderma reesei	39.07	3.00e-27	117.00
IUUC-Tvi-122550	Trichoderma virens	30.27	2.00e-45	177.00
IUUC-Tae-124064	Triticum aestivum	42.99	7.00e-70	257.00
IUUC-Tur-126538	Triticum urartu	38.22	6.00e-49	188.00
IUUC-Tme-127197	Tuber melanosporum	40.73	1.00e-67	251.00
IUUC-Tbe-127385	Tupaia belangeri	89.87	0.00e+00	628.00
IUUC-Ttr-128795	Tursiops truncatus	99.70	0.00e+00	699.00
IUUC-Uma-129401	Ustilago maydis	35.59	4.00e-53	202.00
IUUC-Vda-129968	Verticillium dahliae	29.35	9.00e-42	165.00
IUUC-Vvi-130944	Vitis vinifera	45.92	3.00e-78	285.00
IUUC-Xtr-131884	Xenopus tropicalis	94.05	0.00e+00	650.00
IUUC-Xma-133488	Xiphophorus maculatus	90.21	0.00e+00	634.00
IUUC-Yli-134552	Yarrowia lipolytica	25.42	1.00e-35	144.00
IUUC-Zma-135530	Zea mays	43.45	3.00e-67	249.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence