iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007662

UUCD1 version

UUC-ArT-00210

Ensembl Protein ID

AT4G34100.1

UniProt Accession

F4JKK0; F4JKK1; O49494; Q0WLP2; SUD1_ARATH

Genbank Protein ID

CAA17562.1; CAB80127.1; AEE86323.1; AEE86324.1; BAF01965.1

Protein Name

Probable E3 ubiquitin ligase SUD1; Protein ECERIFERUM 9; Protein SUPPRESSOR OF DRY2 DEFFECTS 1; RING-type E3 ubiquitin transferase SUD1; RING/U-box domain-containing protein

Genbank Nucleotide ID

AL021961; AL161584; CP002687; CP002687; AK230154

Gene Name

SUD1; CER9; At4g34100; F28A23.140

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT4G34100	AT4G34100.1	AT4G34100.1
AT4G34100	AT4G34100.2	AT4G34100.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	HINT
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	23404890; 24812105

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	0.36	12.3	68	115

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlpCgHv....f.hadClqkwpglknssskefrCPlCr 46
           C iC+++   ++ pl  pC       f h+dCl +w     + s++ +C +C+
   Q: 68   CRICRNPGdaDN-PLRYPCACSgsikFvHQDCLLQW----LNHSNARQCEVCK 115
           ******766466.8889*9866777755********....7899********6 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Probable E3 ubiquitin ligase acting as a positive post-transcriptional regulator of 3-hydroxy-3-methylglutaryl-coenzyme A reductase activity. Might be involved in the quality control that degrades misfolded proteins (By similarity).

Protein Sequence
(Fasta)

MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD 60
DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL QWLNHSNARQ CEVCKHPFSF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TACAAGACCC GGTTAGGCCT ACCATATAAT CAATTTTCTC GGTGTCTTTG ATTTTTTTTC 60
CGATCTTTTT CTATTTTAAT TCTCGAGGAT AATAATTATT CGCGATAGAC GACGCCTTTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0809--Transit peptide
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR011016--Znf_RING-CH
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51292--ZF_RING_CH

Pfam

PF12906--RINGv

SMART

SM00744--RINGv

Gene Ontology

GO:0030176--C:integral component of endoplasmic reticulum membrane
GO:1904264--F:ubiquitin protein ligase activity involved in ERAD pathway
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0042335--P:cuticle development
GO:0010143--P:cutin biosynthetic process
GO:0008299--P:isoprenoid biosynthetic process
GO:1900490--P:positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity
GO:0009414--P:response to water deprivation
GO:0010345--P:suberin biosynthetic process
GO:0030433--P:ubiquitin-dependent ERAD pathway
GO:0010025--P:wax biosynthetic process

KEGG

ath:AT4G34100

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000529	Aegilops tauschii	56.36	0.00e+00	976.00
IUUC-Aml-002317	Ailuropoda melanoleuca	30.14	6.00e-59	221.00
IUUC-Atr-002732	Amborella trichopoda	69.00	0.00e+00	1360.00
IUUC-Apl-003346	Anas platyrhynchos	29.04	3.00e-54	206.00
IUUC-Aca-004674	Anolis carolinensis	29.80	2.00e-58	220.00
IUUC-Aly-005919	Arabidopsis lyrata	98.50	0.00e+00	1935.00
IUUC-Ago-007857	Ashbya gossypii	34.33	4.00e-10	60.50
IUUC-Acl-008114	Aspergillus clavatus	25.00	3.00e-43	170.00
IUUC-Afl-008703	Aspergillus flavus	25.74	1.00e-40	161.00
IUUC-Afu-008872	Aspergillus fumigatus	26.30	6.00e-43	169.00
IUUC-Ani-009237	Aspergillus nidulans	27.10	2.00e-43	171.00
IUUC-Ang-009656	Aspergillus niger	27.52	5.00e-40	159.00
IUUC-Aor-010019	Aspergillus oryzae	25.58	1.00e-40	162.00
IUUC-Ate-010367	Aspergillus terreus	37.02	2.00e-34	141.00
IUUC-Ame-011557	Astyanax mexicanus	29.37	5.00e-48	185.00
IUUC-Bgr-011974	Blumeria graminis	28.74	1.00e-52	201.00
IUUC-Bta-013572	Bos taurus	29.96	2.00e-58	220.00
IUUC-Bci-013727	Botrytis cinerea	26.30	1.00e-50	195.00
IUUC-Bdi-014478	Brachypodium distachyon	67.30	0.00e+00	1384.00
IUUC-Bol-015765	Brassica oleracea	92.56	0.00e+00	1922.00
IUUC-Bra-017013	Brassica rapa	92.10	0.00e+00	1902.00
IUUC-Cel-018256	Caenorhabditis elegans	28.31	3.00e-42	166.00
IUUC-Cja-019361	Callithrix jacchus	30.14	3.00e-59	222.00
IUUC-Cfa-021059	Canis familiaris	30.14	7.00e-59	221.00
IUUC-Cpo-022259	Cavia porcellus	30.14	3.00e-54	206.00
IUUC-Csa-024132	Chlorocebus sabaeus	30.14	1.00e-58	221.00
IUUC-Cho-024752	Choloepus hoffmanni	26.17	5.00e-44	172.00
IUUC-Cin-025673	Ciona intestinalis	29.48	1.00e-53	204.00
IUUC-Csv-026342	Ciona savignyi	50.00	3.00e-11	60.80
IUUC-Cgl-026714	Colletotrichum gloeosporioides	35.68	3.00e-33	137.00
IUUC-Cne-026977	Cryptococcus neoformans	33.03	3.00e-30	127.00
IUUC-Cme-027283	Cyanidioschyzon merolae	24.92	2.00e-40	160.00
IUUC-Dre-027968	Danio rerio	29.23	4.00e-55	209.00
IUUC-Dno-029848	Dasypus novemcinctus	29.62	3.00e-58	219.00
IUUC-Dor-031149	Dipodomys ordii	24.52	5.00e-23	102.00
IUUC-Dse-031295	Dothistroma septosporum	24.19	5.00e-43	170.00
IUUC-Dme-031749	Drosophila melanogaster	36.36	5.00e-36	145.00
IUUC-Ete-032230	Echinops telfairi	32.24	1.00e-41	164.00
IUUC-Eca-034268	Equus caballus	30.14	1.00e-57	218.00
IUUC-Eeu-034731	Erinaceus europaeus	29.00	2.00e-20	94.00
IUUC-Fca-036434	Felis catus	29.97	4.00e-59	222.00
IUUC-Fal-036963	Ficedula albicollis	29.37	2.00e-58	219.00
IUUC-Fox-038040	Fusarium oxysporum	30.74	1.00e-27	118.00
IUUC-Fso-038260	Fusarium solani	42.42	1.00e-27	119.00
IUUC-Gmo-038761	Gadus morhua	30.25	7.00e-55	208.00
IUUC-Ggr-039905	Gaeumannomyces graminis	36.68	3.00e-33	137.00
IUUC-Gga-041150	Gallus gallus	28.97	2.00e-57	216.00
IUUC-Gac-042399	Gasterosteus aculeatus	29.23	3.00e-59	222.00
IUUC-Gma-042674	Glycine max	76.39	0.00e+00	1628.00
IUUC-Ggo-045093	Gorilla gorilla	30.14	5.00e-59	222.00
IUUC-Hsa-046275	Homo sapiens	30.14	5.00e-59	222.00
IUUC-Hvu-047562	Hordeum vulgare	32.13	7.00e-75	275.00
IUUC-Itr-048106	Ictidomys tridecemlineatus	28.38	8.00e-34	136.00
IUUC-Kpa-049197	Komagataella pastoris	47.14	6.00e-18	86.30
IUUC-Lch-050358	Latimeria chalumnae	28.96	2.00e-53	203.00
IUUC-Lpe-051172	Leersia perrieri	63.03	0.00e+00	1247.00
IUUC-Loc-051866	Lepisosteus oculatus	29.96	1.00e-58	221.00
IUUC-Lma-053314	Leptosphaeria maculans	33.33	2.00e-33	137.00
IUUC-Laf-054000	Loxodonta africana	28.23	3.00e-40	159.00
IUUC-Mcc-055595	Macaca mulatta	30.14	1.00e-58	221.00
IUUC-Meu-056541	Macropus eugenii	39.53	8.00e-29	121.00
IUUC-Mor-057197	Magnaporthe oryzae	23.65	2.00e-40	161.00
IUUC-Mpo-057582	Magnaporthe poae	36.18	2.00e-32	134.00
IUUC-Mtr-057848	Medicago truncatula	76.63	0.00e+00	1590.00
IUUC-Mla-058855	Melampsora laricipopulina	25.35	2.00e-11	63.90
IUUC-Mga-059985	Meleagris gallopavo	30.56	9.00e-58	218.00
IUUC-Mvi-060425	Microbotryum violaceum	26.64	2.00e-26	114.00
IUUC-Mmr-061236	Microcebus murinus	29.22	3.00e-54	206.00
IUUC-Mdo-062693	Monodelphis domestica	29.60	2.00e-58	220.00
IUUC-Mmu-064221	Mus musculus	29.48	6.00e-59	221.00
IUUC-Mac-064930	Musa acuminata	100.00	1.00e-28	117.00
IUUC-Mpu-066231	Mustela putorius furo	30.14	7.00e-59	221.00
IUUC-Mlu-067461	Myotis lucifugus	30.14	6.00e-59	222.00
IUUC-Nfi-068608	Neosartorya fischeri	26.05	9.00e-44	172.00
IUUC-Ncr-068743	Neurospora crassa	34.56	2.00e-33	138.00
IUUC-Nle-069646	Nomascus leucogenys	30.14	5.00e-59	222.00
IUUC-Opr-070365	Ochotona princeps	35.60	3.00e-32	133.00
IUUC-Ont-071418	Oreochromis niloticus	30.94	3.00e-60	226.00
IUUC-Oan-073127	Ornithorhynchus anatinus	29.84	5.00e-60	225.00
IUUC-Ocu-074853	Oryctolagus cuniculus	27.83	8.00e-51	194.00
IUUC-Oba-075890	Oryza barthii	68.28	0.00e+00	1383.00
IUUC-Obr-076659	Oryza brachyantha	67.32	0.00e+00	1249.00
IUUC-Ogl-077236	Oryza glaberrima	68.85	0.00e+00	1408.00
IUUC-Ogu-078167	Oryza glumaepatula	68.09	0.00e+00	1380.00
IUUC-Oin-079695	Oryza indica	67.43	0.00e+00	687.00
IUUC-Olo-080267	Oryza longistaminata	57.53	0.00e+00	828.00
IUUC-Oni-083058	Oryza nivara	68.00	0.00e+00	1378.00
IUUC-Opu-083911	Oryza punctata	67.87	0.00e+00	1399.00
IUUC-Oru-084882	Oryza rufipogon	68.09	0.00e+00	1380.00
IUUC-Osa-085984	Oryza sativa	68.95	0.00e+00	1413.00
IUUC-Ola-087523	Oryzias latipes	31.12	6.00e-62	231.00
IUUC-Olu-087805	Ostreococcus lucimarinus	27.66	1.00e-07	50.40
IUUC-Oga-088607	Otolemur garnettii	30.14	2.00e-58	220.00
IUUC-Oar-089601	Ovis aries	29.96	2.00e-58	219.00
IUUC-Ptr-091477	Pan troglodytes	30.14	5.00e-59	222.00
IUUC-Pan-092525	Papio anubis	30.27	8.00e-40	158.00
IUUC-Psi-094098	Pelodiscus sinensis	28.67	4.00e-57	216.00
IUUC-Pma-094706	Petromyzon marinus	47.06	1.00e-32	130.00
IUUC-Pno-094876	Phaeosphaeria nodorum	27.59	2.00e-42	167.00
IUUC-Ppa-095692	Physcomitrella patens	55.01	0.00e+00	1023.00
IUUC-Pfo-096116	Poecilia formosa	28.62	1.00e-62	234.00
IUUC-Pab-098038	Pongo abelii	30.14	5.00e-59	222.00
IUUC-Pop-099523	Populus trichocarpa	79.90	0.00e+00	1608.00
IUUC-Pca-101000	Procavia capensis	27.87	5.00e-40	159.00
IUUC-Ppe-101729	Prunus persica	79.47	0.00e+00	1615.00
IUUC-Pva-102450	Pteropus vampyrus	29.42	3.00e-56	213.00
IUUC-Pgr-103425	Puccinia graminis	27.02	7.00e-27	116.00
IUUC-Ptt-103985	Puccinia triticina	26.69	1.00e-24	109.00
IUUC-Pte-104148	Pyrenophora teres	27.29	4.00e-50	193.00
IUUC-Pyt-104663	Pyrenophora triticirepentis	27.46	7.00e-50	192.00
IUUC-Rno-105989	Rattus norvegicus	29.48	4.00e-59	222.00
IUUC-Sce-106352	Saccharomyces cerevisiae	34.23	7.00e-19	89.40
IUUC-Sha-107488	Sarcophilus harrisii	53.85	8.00e-16	76.60
IUUC-Sja-107820	Schizosaccharomyces japonicus	55.88	8.00e-23	102.00
IUUC-Spo-108307	Schizosaccharomyces pombe	24.15	3.00e-39	157.00
IUUC-Smo-109022	Selaginella moellendorffii	53.48	0.00e+00	869.00
IUUC-Sit-110338	Setaria italica	68.45	0.00e+00	1377.00
IUUC-Sly-111874	Solanum lycopersicum	78.52	0.00e+00	1580.00
IUUC-Stu-112495	Solanum tuberosum	78.71	0.00e+00	1593.00
IUUC-Sar-113497	Sorex araneus	41.09	2.00e-31	130.00
IUUC-Sbi-114728	Sorghum bicolor	66.16	0.00e+00	944.00
IUUC-Sre-115100	Sporisorium reilianum	25.05	3.00e-27	117.00
IUUC-Ssc-115407	Sus scrofa	29.96	2.00e-58	220.00
IUUC-Tgu-117016	Taeniopygia guttata	29.37	2.00e-58	220.00
IUUC-Tru-118345	Takifugu rubripes	29.41	4.00e-48	186.00
IUUC-Tsy-119470	Tarsius syrichta	26.39	4.00e-46	179.00
IUUC-Tni-119846	Tetraodon nigroviridis	28.89	5.00e-57	215.00
IUUC-Tca-121135	Theobroma cacao	78.65	0.00e+00	1652.00
IUUC-Tre-121940	Trichoderma reesei	35.45	6.00e-32	133.00
IUUC-Tvi-122339	Trichoderma virens	35.98	1.00e-31	132.00
IUUC-Tae-122752	Triticum aestivum	67.14	0.00e+00	1371.00
IUUC-Tur-126371	Triticum urartu	56.26	0.00e+00	974.00
IUUC-Tme-127133	Tuber melanosporum	27.21	6.00e-45	176.00
IUUC-Tbe-127567	Tupaia belangeri	51.92	1.00e-15	75.50
IUUC-Ttr-128802	Tursiops truncatus	27.42	1.00e-48	187.00
IUUC-Uma-129384	Ustilago maydis	23.68	9.00e-32	132.00
IUUC-Vda-130026	Verticillium dahliae	30.24	1.00e-29	125.00
IUUC-Vpa-130798	Vicugna pacos	30.83	5.00e-42	166.00
IUUC-Vvi-130911	Vitis vinifera	76.68	0.00e+00	1609.00
IUUC-Xtr-132891	Xenopus tropicalis	28.25	5.00e-53	202.00
IUUC-Xma-133659	Xiphophorus maculatus	28.92	2.00e-49	190.00
IUUC-Yli-134628	Yarrowia lipolytica	24.56	8.00e-47	181.00
IUUC-Zma-135318	Zea mays	67.36	0.00e+00	1356.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence