iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000020119.8	ENSRNOT00000027383.6	ENSRNOP00000027383.6
ENSRNOG00000020119.8	ENSRNOT00000075810.2	ENSRNOP00000066774.2
ENSRNOG00000020119.8	ENSRNOT00000027372.6	ENSRNOP00000027372.7
ENSRNOG00000020119.8	ENSRNOT00000027393.5	ENSRNOP00000027393.5
ENSRNOG00000020119.8	ENSRNOT00000084132.1	ENSRNOP00000074164.1
ENSRNOG00000020119.8	ENSRNOT00000079794.1	ENSRNOP00000075260.1
ENSRNOG00000020119.8	ENSRNOT00000079008.1	ENSRNOP00000069635.1
ENSRNOG00000020119.8	ENSRNOT00000077824.1	ENSRNOP00000074100.1
ENSRNOG00000020119.8	ENSRNOT00000027343.6	ENSRNOP00000027343.3
ENSRNOG00000020119.8	ENSRNOT00000027340.5	ENSRNOP00000027340.3

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
microRNA	TRANSFAC	RAID2
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
UBD/Alpha-Helix/CUE	28.75	7.10e-01	31.60	IUUC-Sce-106211

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MSLENRPEDI RTFVSPRWHI HGCLRQEKAS VVISRCLSYG AWRLLLWLLL VATWDAGSAQ 60
LHYSIPEEAK HGTFVGRIAQ DLGLELMELV PRLFRVASKD RGDLLEVNLQ NGILFVNSRI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCGGAGAA AAATAGATCT TCTAATGGAA ACAAAGCAAG AAACATTCTA CATGGATTTT 60
ACCACTGACG GCAGACTAGG AACACGGTGT CTGCTGCTCT CGCTCTTGCT CCTTGCAGCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0106--Calcium
KW-0130--Cell adhesion
KW-1003--Cell membrane
KW-0181--Complete proteome
KW-0472--Membrane
KW-0675--Receptor
KW-1185--Reference proteome
KW-0677--Repeat
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR002126--Cadherin
IPR015919--Cadherin-like
IPR031904--Cadherin_CBD
IPR020894--Cadherin_CS
IPR013164--Cadherin_N
IPR023226--Glyco_hydro_49_N_dom

PROSITE

PS00232--CADHERIN_1
PS50268--CADHERIN_2

Pfam

PF00028--Cadherin
PF08266--Cadherin_2
PF15974--Cadherin_tail

PRINTS

PR00205--CADHERIN

SMART

SM00112--CA

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0005886--C:plasma membrane
GO:0005509--F:calcium ion binding
GO:0007156--P:homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007283--P:spermatogenesis

KEGG

rno:116778

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Cja-019003	Callithrix jacchus	33.18	2.00e-79	290.00
IUUC-Cho-024956	Choloepus hoffmanni	28.05	4.00e-31	132.00
IUUC-Cin-025603	Ciona intestinalis	27.16	3.00e-17	84.00
IUUC-Itr-048244	Ictidomys tridecemlineatus	29.43	3.00e-50	194.00
IUUC-Mmr-061467	Microcebus murinus	29.83	3.00e-51	198.00
IUUC-Sce-106211	Saccharomyces cerevisiae	28.75	7.60e-02	32.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence