iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bta-012382

Ensembl Protein ID

ENSBTAP00000027868.5

UniProt Accession

E1BEK9; E1BEK9_BOVIN

Genbank Protein ID

ENSBTAP00000027868

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

DAAA02019036

Gene Name

UPF1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSBTAG00000020922.5	ENSBTAT00000027868.5	ENSBTAP00000027868.5

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/Other	57.11	0.00e+00	964.00	IUUC-Sce-106206

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Bos taurus

Protein Sequence
(Fasta)

MSVEAYGPSS QTLTFLDTEE AELLGADTQG SEFEFTDFTL PSQTQTPPGG PGGGGAGAPV 60
GAGPGAAAGQ LDAQVGGPEG ILQNGAVDDS VAKTSQLLAE LNFEEDEEDT YYTKDLPVHA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAGCGTGG AGGCGTACGG GCCCAGCTCG CAGACGCTCA CCTTCTTGGA CACTGAGGAG 60
GCCGAGCTGC TCGGCGCCGA CACCCAGGGC TCCGAGTTCG AGTTTACCGA CTTCACCCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR006935--Helicase/UvrB_N
IPR027417--P-loop_NTPase
IPR018999--RNA-helicase_UPF1_UPF2-interct

Pfam

PF04851--ResIII
PF09416--UPF1_Zn_bind

Gene Ontology

GO:0000785--C:chromatin
GO:0005737--C:cytoplasm
GO:0035145--C:exon-exon junction complex
GO:0000784--C:nuclear chromosome, telomeric region
GO:0005654--C:nucleoplasm
GO:0044530--C:supraspliceosomal complex
GO:0005524--F:ATP binding
GO:0004004--F:ATP-dependent RNA helicase activity
GO:0003682--F:chromatin binding
GO:0003723--F:RNA binding
GO:0042162--F:telomeric DNA binding
GO:0008270--F:zinc ion binding
GO:0061158--P:3'-UTR-mediated mRNA destabilization
GO:0071347--P:cellular response to interleukin-1
GO:0071222--P:cellular response to lipopolysaccharide
GO:0006281--P:DNA repair
GO:0009048--P:dosage compensation by inactivation of X chromosome
GO:0071044--P:histone mRNA catabolic process
GO:0000294--P:nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay
GO:0000184--P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0061014--P:positive regulation of mRNA catabolic process
GO:0006449--P:regulation of translational termination
GO:0032201--P:telomere maintenance via semi-conservative replication

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000680	Aegilops tauschii	70.47	0.00e+00	1169.00
IUUC-Aml-002008	Ailuropoda melanoleuca	98.32	0.00e+00	2159.00
IUUC-Atr-002632	Amborella trichopoda	66.88	0.00e+00	1263.00
IUUC-Apl-003997	Anas platyrhynchos	98.29	0.00e+00	2038.00
IUUC-Aca-004322	Anolis carolinensis	31.55	6.00e-54	206.00
IUUC-Aly-006521	Arabidopsis lyrata	70.87	0.00e+00	1245.00
IUUC-Ath-007059	Arabidopsis thaliana	70.63	0.00e+00	1244.00
IUUC-Ago-007801	Ashbya gossypii	55.05	0.00e+00	948.00
IUUC-Acl-008312	Aspergillus clavatus	68.34	0.00e+00	1192.00
IUUC-Afl-008429	Aspergillus flavus	67.47	0.00e+00	1192.00
IUUC-Afu-009092	Aspergillus fumigatus	63.67	0.00e+00	1193.00
IUUC-Ani-009317	Aspergillus nidulans	68.34	0.00e+00	1192.00
IUUC-Ang-009783	Aspergillus niger	59.62	0.00e+00	1194.00
IUUC-Aor-010178	Aspergillus oryzae	67.47	0.00e+00	1192.00
IUUC-Ate-010294	Aspergillus terreus	59.96	0.00e+00	1200.00
IUUC-Ame-010774	Astyanax mexicanus	74.42	0.00e+00	1230.00
IUUC-Bgr-012293	Blumeria graminis	66.71	0.00e+00	1185.00
IUUC-Bci-013937	Botrytis cinerea	66.95	0.00e+00	1180.00
IUUC-Bdi-014612	Brachypodium distachyon	70.28	0.00e+00	1256.00
IUUC-Bol-015145	Brassica oleracea	69.82	0.00e+00	1236.00
IUUC-Bra-017370	Brassica rapa	68.40	0.00e+00	1200.00
IUUC-Cel-018240	Caenorhabditis elegans	58.32	0.00e+00	992.00
IUUC-Cja-019892	Callithrix jacchus	98.68	0.00e+00	2048.00
IUUC-Cfa-020700	Canis familiaris	98.67	0.00e+00	2169.00
IUUC-Cpo-021510	Cavia porcellus	97.43	0.00e+00	2172.00
IUUC-Cre-022731	Chlamydomonas reinhardtii	58.55	0.00e+00	985.00
IUUC-Csa-023665	Chlorocebus sabaeus	97.52	0.00e+00	2126.00
IUUC-Cin-025798	Ciona intestinalis	82.73	0.00e+00	1343.00
IUUC-Csv-025901	Ciona savignyi	71.40	0.00e+00	1604.00
IUUC-Cgl-026653	Colletotrichum gloeosporioides	63.95	0.00e+00	1156.00
IUUC-Cne-027014	Cryptococcus neoformans	62.92	0.00e+00	1198.00
IUUC-Dre-028705	Danio rerio	92.38	0.00e+00	2052.00
IUUC-Dor-030369	Dipodomys ordii	95.43	0.00e+00	1984.00
IUUC-Dme-031767	Drosophila melanogaster	70.29	0.00e+00	1399.00
IUUC-Ete-032800	Echinops telfairi	33.80	3.00e-53	203.00
IUUC-Eca-033840	Equus caballus	98.86	0.00e+00	2046.00
IUUC-Fca-035466	Felis catus	99.81	0.00e+00	2070.00
IUUC-Fal-037548	Ficedula albicollis	97.26	0.00e+00	1990.00
IUUC-Fox-038023	Fusarium oxysporum	58.28	0.00e+00	1142.00
IUUC-Gmo-039285	Gadus morhua	91.50	0.00e+00	1995.00
IUUC-Ggr-039810	Gaeumannomyces graminis	65.82	0.00e+00	1176.00
IUUC-Gga-040972	Gallus gallus	96.37	0.00e+00	2098.00
IUUC-Gac-042075	Gasterosteus aculeatus	91.69	0.00e+00	2027.00
IUUC-Gma-042713	Glycine max	71.58	0.00e+00	1290.00
IUUC-Ggo-045398	Gorilla gorilla	98.76	0.00e+00	2042.00
IUUC-Hsa-046152	Homo sapiens	97.52	0.00e+00	2126.00
IUUC-Hvu-047555	Hordeum vulgare	71.40	0.00e+00	727.00
IUUC-Itr-048247	Ictidomys tridecemlineatus	99.70	0.00e+00	2036.00
IUUC-Kpa-049205	Komagataella pastoris	49.69	0.00e+00	773.00
IUUC-Lch-049587	Latimeria chalumnae	97.42	0.00e+00	1321.00
IUUC-Lpe-051059	Leersia perrieri	72.20	0.00e+00	1261.00
IUUC-Loc-051911	Lepisosteus oculatus	92.91	0.00e+00	2044.00
IUUC-Lma-053007	Leptosphaeria maculans	60.87	0.00e+00	1160.00
IUUC-Laf-054234	Loxodonta africana	98.32	0.00e+00	2147.00
IUUC-Mcc-054762	Macaca mulatta	98.76	0.00e+00	2161.00
IUUC-Meu-056677	Macropus eugenii	94.51	0.00e+00	889.00
IUUC-Mor-057147	Magnaporthe oryzae	66.34	0.00e+00	1168.00
IUUC-Mpo-057314	Magnaporthe poae	65.82	0.00e+00	1177.00
IUUC-Mtr-058329	Medicago truncatula	71.46	0.00e+00	1287.00
IUUC-Mla-059094	Melampsora laricipopulina	66.33	0.00e+00	679.00
IUUC-Mga-060126	Meleagris gallopavo	97.91	0.00e+00	2013.00
IUUC-Mvi-060373	Microbotryum violaceum	66.59	0.00e+00	1270.00
IUUC-Mmr-060628	Microcebus murinus	98.49	0.00e+00	2159.00
IUUC-Mdo-061858	Monodelphis domestica	98.10	0.00e+00	2028.00
IUUC-Mmu-064116	Mus musculus	97.16	0.00e+00	2115.00
IUUC-Mac-065136	Musa acuminata	70.63	0.00e+00	1253.00
IUUC-Mpu-066463	Mustela putorius furo	97.70	0.00e+00	2134.00
IUUC-Mlu-068098	Myotis lucifugus	97.42	0.00e+00	2122.00
IUUC-Nfi-068370	Neosartorya fischeri	63.67	0.00e+00	1194.00
IUUC-Ncr-068792	Neurospora crassa	60.58	0.00e+00	1165.00
IUUC-Nle-070102	Nomascus leucogenys	98.67	0.00e+00	2034.00
IUUC-Opr-070620	Ochotona princeps	90.77	0.00e+00	1867.00
IUUC-Ont-072685	Oreochromis niloticus	91.67	0.00e+00	2016.00
IUUC-Oan-073665	Ornithorhynchus anatinus	97.25	0.00e+00	2133.00
IUUC-Ocu-074154	Oryctolagus cuniculus	33.41	2.00e-55	211.00
IUUC-Oba-075075	Oryza barthii	62.82	0.00e+00	1009.00
IUUC-Obr-076183	Oryza brachyantha	66.01	0.00e+00	1085.00
IUUC-Ogl-077691	Oryza glaberrima	67.65	0.00e+00	1264.00
IUUC-Ogu-078423	Oryza glumaepatula	67.65	0.00e+00	1263.00
IUUC-Oin-080107	Oryza indica	67.65	0.00e+00	1263.00
IUUC-Olo-080269	Oryza longistaminata	67.12	0.00e+00	1189.00
IUUC-Ome-081779	Oryza meridionalis	67.65	0.00e+00	1260.00
IUUC-Oni-082366	Oryza nivara	67.65	0.00e+00	1263.00
IUUC-Opu-083958	Oryza punctata	63.65	0.00e+00	1264.00
IUUC-Oru-084182	Oryza rufipogon	67.65	0.00e+00	1262.00
IUUC-Osa-085285	Oryza sativa	67.46	0.00e+00	1263.00
IUUC-Ola-086954	Oryzias latipes	89.77	0.00e+00	1995.00
IUUC-Olu-087685	Ostreococcus lucimarinus	57.18	0.00e+00	945.00
IUUC-Oga-088591	Otolemur garnettii	97.61	0.00e+00	2127.00
IUUC-Oar-089417	Ovis aries	97.42	0.00e+00	2016.00
IUUC-Ptr-091510	Pan troglodytes	96.37	0.00e+00	1853.00
IUUC-Pan-091886	Papio anubis	97.52	0.00e+00	2126.00
IUUC-Psi-093755	Pelodiscus sinensis	98.04	0.00e+00	1431.00
IUUC-Pma-094470	Petromyzon marinus	86.05	0.00e+00	1905.00
IUUC-Pno-094963	Phaeosphaeria nodorum	66.10	0.00e+00	1161.00
IUUC-Ppa-095479	Physcomitrella patens	71.58	0.00e+00	1290.00
IUUC-Pfo-097456	Poecilia formosa	91.31	0.00e+00	2016.00
IUUC-Pab-098075	Pongo abelii	92.04	0.00e+00	1970.00
IUUC-Pop-099557	Populus trichocarpa	61.37	0.00e+00	1280.00
IUUC-Pca-100717	Procavia capensis	100.00	3.00e-176	612.00
IUUC-Ppe-101675	Prunus persica	62.25	0.00e+00	1292.00
IUUC-Pva-103029	Pteropus vampyrus	96.48	0.00e+00	1386.00
IUUC-Pgr-103318	Puccinia graminis	63.37	0.00e+00	1209.00
IUUC-Ptt-103956	Puccinia triticina	63.46	0.00e+00	1210.00
IUUC-Pte-104399	Pyrenophora teres	61.68	0.00e+00	1173.00
IUUC-Pyt-104749	Pyrenophora triticirepentis	61.46	0.00e+00	1172.00
IUUC-Rno-105784	Rattus norvegicus	97.16	0.00e+00	2153.00
IUUC-Sce-106206	Saccharomyces cerevisiae	57.11	0.00e+00	935.00
IUUC-Sha-106566	Sarcophilus harrisii	99.05	0.00e+00	2055.00
IUUC-Sja-107721	Schizosaccharomyces japonicus	61.79	0.00e+00	1099.00
IUUC-Spo-108258	Schizosaccharomyces pombe	58.89	0.00e+00	1051.00
IUUC-Ssl-108640	Sclerotinia sclerotiorum	63.61	0.00e+00	1041.00
IUUC-Sit-109760	Setaria italica	62.61	0.00e+00	1261.00
IUUC-Sly-111807	Solanum lycopersicum	72.21	0.00e+00	1293.00
IUUC-Stu-112869	Solanum tuberosum	66.67	0.00e+00	1285.00
IUUC-Sar-112950	Sorex araneus	38.31	2.00e-43	170.00
IUUC-Sbi-114863	Sorghum bicolor	72.58	0.00e+00	1258.00
IUUC-Sre-115092	Sporisorium reilianum	66.29	0.00e+00	1259.00
IUUC-Tgu-117214	Taeniopygia guttata	90.21	0.00e+00	1668.00
IUUC-Tru-118386	Takifugu rubripes	88.56	0.00e+00	2022.00
IUUC-Tsy-119550	Tarsius syrichta	95.93	3.00e-165	575.00
IUUC-Tni-120212	Tetraodon nigroviridis	89.82	0.00e+00	1926.00
IUUC-Tca-121353	Theobroma cacao	70.91	0.00e+00	1284.00
IUUC-Tre-122245	Trichoderma reesei	34.94	9.00e-53	202.00
IUUC-Tvi-122452	Trichoderma virens	63.75	0.00e+00	1113.00
IUUC-Tae-123692	Triticum aestivum	72.22	0.00e+00	1254.00
IUUC-Tur-126770	Triticum urartu	60.55	0.00e+00	1068.00
IUUC-Tme-126956	Tuber melanosporum	68.54	0.00e+00	1198.00
IUUC-Tbe-127873	Tupaia belangeri	33.89	3.00e-50	193.00
IUUC-Ttr-128212	Tursiops truncatus	95.12	0.00e+00	2018.00
IUUC-Uma-129327	Ustilago maydis	65.62	0.00e+00	1249.00
IUUC-Vda-129858	Verticillium dahliae	64.97	0.00e+00	1133.00
IUUC-Vpa-130743	Vicugna pacos	33.89	6.00e-51	196.00
IUUC-Vvi-131222	Vitis vinifera	71.58	0.00e+00	1266.00
IUUC-Xtr-131800	Xenopus tropicalis	82.11	0.00e+00	1751.00
IUUC-Xma-133216	Xiphophorus maculatus	91.13	0.00e+00	2011.00
IUUC-Yli-134482	Yarrowia lipolytica	53.61	0.00e+00	894.00
IUUC-Zma-134802	Zea mays	71.48	0.00e+00	1263.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence